Gene Msed_1216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1216 
Symbol 
ID5103830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1188781 
End bp1189815 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content52% 
IMG OID640507108 
Productdehydratase 
Protein accessionYP_001191301 
Protein GI146303985 
COG category[I] Lipid transport and metabolism 
COG ID[COG2030] Acyl dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGGGG GATTTGGCCC CTTCTTTGAG GACTTTGAGA TAGGACAGGT CATAAGGCAC 
AGACCTTGTA GAACCCTGGA GCAGTCAGAT AACGTGCTTT GGTCTACGCT CACCCTGGAT
TACACTCCTC TCTACCTGGA CAGCGTCTAC GCGTCTTACA CGGAGTATGG AAAGGTAATC
GTGAACCCAA GGCTTGTCCA CTCCACGGTA ATAGGCCTTT CCACCAGGGA CACCAGCATT
AACACCCTGG CCTTTCTTGG GATTGACTAC GAGGAAATGA GGAGGCCCAT ATATCCAGGG
GACACCCTCT GCGTCGAGAC CGAGGTCGTG GGGAAGAGGG AGTCCAAGAG GCCCAACGTA
GGGGTGGTGA GCTGGGTGCA TAGGGTCTTC AATCAGAGGG GTGAACCCGT GTATGAAATA
AGGAGAAATA ACCTAGTGTA TAAGAGGTCT TACTCCCCAT GGTTGAAGTT CCTTGAGGGT
GGGGAGGCGA AGCCTGAAAT CAACGTGCAG AAAGGGGAGA GAATAGGGCT AAACAAGGAG
GAAAGGAGCC TGTCTCACCC AGGATGGGAG GGAAGATACC TCGAGGATTT CACACCTGGG
GAGACGGTGA TTCATCGCCT AGGTAGGACA GTATCCCAGT ACGACAATCT GTTAACAACT
GTGTTGTCCA TGAATACCGC AACGCTCCAC CTGGACGACG AGTACATGAA GTACCACGAA
TATGGAAAGC CTGTGGTTCA GGGCCCCTTC GTCGTTGGGG TTGGGACGGG AATTTCGTCC
TTTGAACTTG GGGGGAACAT CTCAGCCGAC CGCGGTATCA GGGAACTCAA GTTGAGGGCT
CCAGTTTTTG ATGGAGACAC TCTCCACGCC GTGAGTGAGG TGGTTGAGGT TCAACCTGGA
AAGGAGAGCG GAAGGGTCAC CCTGAGAACG AGGATTTACA AGAATAACCT CTCGGTAGAG
GTGGCAACTT TCATCAGGGA AATCGAGGTT TTCAGGAGAG AGTCCTCCCC ATGGGTGAAA
ATATGGAAAG GATAG
 
Protein sequence
MFGGFGPFFE DFEIGQVIRH RPCRTLEQSD NVLWSTLTLD YTPLYLDSVY ASYTEYGKVI 
VNPRLVHSTV IGLSTRDTSI NTLAFLGIDY EEMRRPIYPG DTLCVETEVV GKRESKRPNV
GVVSWVHRVF NQRGEPVYEI RRNNLVYKRS YSPWLKFLEG GEAKPEINVQ KGERIGLNKE
ERSLSHPGWE GRYLEDFTPG ETVIHRLGRT VSQYDNLLTT VLSMNTATLH LDDEYMKYHE
YGKPVVQGPF VVGVGTGISS FELGGNISAD RGIRELKLRA PVFDGDTLHA VSEVVEVQPG
KESGRVTLRT RIYKNNLSVE VATFIREIEV FRRESSPWVK IWKG