| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1177 |
|---|
| Symbol | |
|---|
| ID | 5104473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1146286 |
|---|
| End bp | 1147593 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640507069 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001191262 |
|---|
| Protein GI | 146303946 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.624502 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAGGT TTAGTTCCAA GGATTCCGCT ACCGTCACGG TTATAGGCGG TGGGGCTAAC
GGCCTTTTCA CCGCGTTAGA CCTGGCACTG AGGGGGGTTA AGGTGGTCCT AGTGGAAAGG
GGGGATATAG GCTCAGGGAC ATCTGGGAAG TTCCACGGAC TTCTCCACAG CGGGGCTAGG
TATGCCGTGA CGGATCCGGG ATCGGCGAAG GAGTGCGCCG AGGAGAACGA GGTAATCTCA
AGGATCGCGC CTCATGCCGT GAGGGACACG GGAGGCCTCT TTCTGGGAAT CACGGAAGAG
GAGGTGGAGT TCTCTGAGAG GTTTCTTAGA TCGTTAGACT CCCTGGGAAT TAAACATAGG
GTCATGGACA GGGGTGAGCT TCTAAAGGCT GAGCCCCACG CCAATCCCAG CACAAGGATC
GCTGTGTGGG TTCCAGACAA GGTAATCCAC GGTTACGATT TATTGGCCAG CGTCGCGTTT
ACGGCCTCGT TGAGCGGAGC CACGATACTC ACGCAGGCTG AAGTGGTCGA GATTCAGAGG
GGAAGCGAAC TTAAGGTTAA GATCCTGGAC AAGCTAACTG GGGAGACCCA CGTCATCGAG
TCGCAGATCA TTGTAAACGC CTCAGGTCCT TGGTCCTTCA AGGTTACTGG ACTTGCGGGA
ATTGGCGAGG TCCCAGTCCT TCCCACGGCT GGAATCATGG CAGTGTTCGA CAGAAGACTC
AATAACATGG TCCTGAACAG GTTGAGGCCA CCCTCCGACG GGGATATCCT GGTACCTTAC
GGTGAGGCCT CAATTCTAGG AACCACGGCT ACTGTCGTGG ATGATCCTGA CAACTTCTCA
ATCGCCGACG AGGAGGTCAA CCTCCTGTTG AGGGAAGGAG TGAAACTAGT GCCCGGTTTA
GCTCAGGCGA AGGTATCCAG GGTTTACGCC TCGGTTAGGC CGTTGATAGC CAACGCTGAC
TCGGGAAGGC AGGCGAGCAG GGACTACCTT ATCCTAGAAC ATGAAGAAGT CCCAGGCTTG
ATCTCTGTGA TAGGTGGGAA GTTCACGACC GCGAGGCTCT TAGGCGAGAA GGTAGGCGAC
CTCGTTGCGT CAAAACTTGG GGTCAAGGAA AGGAGTAAGA CAAGGGATAT TCGACTGCCA
GGCCCACTGG ACCTTGACCC GTCATGGGTT AGCCCAGACA TGCGGGAAAT GGTTGGCAAG
GTCCTCGCTA GGAGGGGATC ACTAGACGAG GAGAGGTACA TTACGTCTCT TTACGTTGTC
CTATCCACGA TCGCGGGGAG GAAGAGATGG AGCTCAGGAG CGATCTAA
|
|---|
| Protein sequence | MERFSSKDSA TVTVIGGGAN GLFTALDLAL RGVKVVLVER GDIGSGTSGK FHGLLHSGAR
YAVTDPGSAK ECAEENEVIS RIAPHAVRDT GGLFLGITEE EVEFSERFLR SLDSLGIKHR
VMDRGELLKA EPHANPSTRI AVWVPDKVIH GYDLLASVAF TASLSGATIL TQAEVVEIQR
GSELKVKILD KLTGETHVIE SQIIVNASGP WSFKVTGLAG IGEVPVLPTA GIMAVFDRRL
NNMVLNRLRP PSDGDILVPY GEASILGTTA TVVDDPDNFS IADEEVNLLL REGVKLVPGL
AQAKVSRVYA SVRPLIANAD SGRQASRDYL ILEHEEVPGL ISVIGGKFTT ARLLGEKVGD
LVASKLGVKE RSKTRDIRLP GPLDLDPSWV SPDMREMVGK VLARRGSLDE ERYITSLYVV
LSTIAGRKRW SSGAI
|
|---|
| |