| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0660 |
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| Symbol | |
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| ID | 5103820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 604176 |
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| End bp | 604871 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640506564 |
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| Product | hypothetical protein |
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| Protein accession | YP_001190759 |
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| Protein GI | 146303443 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1499] NMD protein affecting ribosome stability and mRNA decay |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000258046 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0100764 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGAGGAA AGTTCTGCGT AATGTGTGGA AAGGAGGACG TAAAACTCAT AGGTAGACTA
TGTCCCTCGT GTTACGTGAA ATCGAGGGAG ATGGTGAGGG TACCCAGGAG CATGTCTATC
ACGGTTTGCA GAATTTGTGG TTCCAGGAAG CTTAAGGGAA AGTGGGTAGC TCCCAGGGGG
GATATCTCCT CATCACTAGA GGAGGAGATA ATCTCGGCGC TAGAACTGGA CGAACACGTG
CAGGAGTACC ATGTGGACGT AGGGCAGATG TGGTCAGACA CTCACGGTAA TAATCACTTT
CCATTAAGGA TTTCAGGTTC AGTTGAAGGA GAGAGGTTTG ACGAAACCAA GGACGTTATG
GTCAAGGTTG AAAGCACGTT ATGCGATTCC TGCGTCAAGA GGAGGGGGAA ATACTACGAG
GCGATAATCC AGCTGAGATC TAGGGAGGGC AACCTGGGAC TTGACGAGAA GAGGTTTTTC
GAGTCCTTCT TTTCCAGGGA GGACGCGGAG AACCTCTCGG ACGTGGTGGA ACTTAGGGAG
GGAGTTGATT ACTACTTCAT TAACAGAACT GTGGCCAAGA GACTTGTGGC CAAGTTCGCC
AGCGAAGTAA AAGTAGAGAT GAAGGAAAGT TACCAAAGGG AGAGGATAAA AAGAGGTAAA
AGGGACGCGA AACTAGTTAT CTCCCTGAGG CTATGA
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| Protein sequence | MGGKFCVMCG KEDVKLIGRL CPSCYVKSRE MVRVPRSMSI TVCRICGSRK LKGKWVAPRG
DISSSLEEEI ISALELDEHV QEYHVDVGQM WSDTHGNNHF PLRISGSVEG ERFDETKDVM
VKVESTLCDS CVKRRGKYYE AIIQLRSREG NLGLDEKRFF ESFFSREDAE NLSDVVELRE
GVDYYFINRT VAKRLVAKFA SEVKVEMKES YQRERIKRGK RDAKLVISLR L
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