Gene Msed_0296 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0296 
Symbol 
ID5104932 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp252715 
End bp253146 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content50% 
IMG OID640506202 
Productrubrerythrin 
Protein accessionYP_001190397 
Protein GI146303081 
COG category[C] Energy production and conversion 
COG ID[COG1592] Rubrerythrin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.585668 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAGCC TAAAGGGAAC TAAAACAGAG GAAAACTTTA AACATGGTTT CATGGGCGAA 
TCCATGGCAA ACAGAAGGTA CCTATACTTC GCTAAGAGAG CAGACGAGGA GGGATACCCC
GAGCTAGCTC AACTCTTAAG GAGCATCGCT GAAGGTGAGA CAGCACACGC TTTCGGACAC
CTAGATTTCA TAAGACAGGG AGGATCAGTG GACCCGGCCA CTGACAAACC CATAGGCACA
ATAGAGCAGA TGCTGGAGTC TGCCATAGCG GGAGAGACCT ACGAGTGGAC CCAAATGTAT
CCAGGCTTCG CCAAGACAGC TAGGGAAGAG GGATTTGACG AGGCTGCAGA GTGGTTTGAA
ACCCTAGCCA GGGCTGAGAA GAGCCACGCT GAAAAGTTCA CAAACGCTCT CAAGATGTTG
AAAGGGAGCT AA
 
Protein sequence
MKSLKGTKTE ENFKHGFMGE SMANRRYLYF AKRADEEGYP ELAQLLRSIA EGETAHAFGH 
LDFIRQGGSV DPATDKPIGT IEQMLESAIA GETYEWTQMY PGFAKTAREE GFDEAAEWFE
TLARAEKSHA EKFTNALKML KGS