| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0212 |
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| Symbol | |
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| ID | 5104078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 173908 |
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| End bp | 174810 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640506117 |
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| Product | flap endonuclease-1 |
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| Protein accession | YP_001190313 |
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| Protein GI | 146302997 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI) |
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| TIGRFAM ID | [TIGR03674] flap structure-specific endonuclease |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.022826 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0048464 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAATAGAC AAGGCAAGGT AACTAGTCAT CTAAATGGAG TCTTTTATAG AACCGTGAAC
CTTCTTGAGG AAGGGATCAT TCCAATTTAC GTTTTCGATG GGAAGCCTCC TGAGTTGAAG
GCCCAGGAAC TGGAGAACAG GAGAAAAATG AAGGAGGAGG CAGAGAAGAA GCTAGAGAAG
GCCAAGGAAT CGGGAAAGGT GGAGGAAATG AGGAAGTACT CGCAGATGAC TTCCAGACTG
ACCACCGATA TGGCGAAGGA AAGCAAGGAA CTCCTGGAAT ACATGGGAGT CCCCACAGTT
CAGGCCCCAT CTGAGGGTGA AGCTGAGGCT GCCTACCTTA ATGCGAAGGG AATTACGTAT
GCCTCCGCCA GTCAAGACTA TGATTCTCTG CTCTTCGGCG CAGAGAAGTT GATCAGAAAC
CTCACCATAA GCGGGAAGAG GAAACTGCCC AACAAGGACG TGTACGTGGA GGTAAAACCT
GAACTCATCG AGACAGCTTC CCTCCTCAAG AAGCTAGAGA TAACAAGGGA GCAACTGATT
GACATTGCGA TTCTGGTGGG AACGGACTAC AACCCCGATG GAGTAAGGGG CATAGGCCCC
AAGAAAGCCT ATAAACTGAT CAAGACCTAC AAAAAAATTG AAAATATAGA TAAAAGGGAG
TTACCTGAGC CTATTTACTT TGACTACGAA AAGATAAGGG AGTTGTTCCT TAAACCTCAA
GTAACTCTTC CGTCCACACC ACTTGAGCTG AGCGATCCCG ATCCCAGCAA GATAATTCAG
TTTCTGGTGA ACGAGAACGA TTTTAACGAG GAAAGGGTTA GGGGAACGAT AGAGAGGCTT
CAGAAGGCTA TGAAGGAGAT TAAGGATATA AAAAGACAAA CAGGGTTGGA TCAGTGGTTT
TAA
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| Protein sequence | MNRQGKVTSH LNGVFYRTVN LLEEGIIPIY VFDGKPPELK AQELENRRKM KEEAEKKLEK
AKESGKVEEM RKYSQMTSRL TTDMAKESKE LLEYMGVPTV QAPSEGEAEA AYLNAKGITY
ASASQDYDSL LFGAEKLIRN LTISGKRKLP NKDVYVEVKP ELIETASLLK KLEITREQLI
DIAILVGTDY NPDGVRGIGP KKAYKLIKTY KKIENIDKRE LPEPIYFDYE KIRELFLKPQ
VTLPSTPLEL SDPDPSKIIQ FLVNENDFNE ERVRGTIERL QKAMKEIKDI KRQTGLDQWF
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