Gene Msed_0185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0185 
Symbol 
ID5103929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp149378 
End bp150253 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content47% 
IMG OID640506090 
Productribokinase 
Protein accessionYP_001190286 
Protein GI146302970 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0524] Sugar kinases, ribokinase family 
TIGRFAM ID[TIGR02152] ribokinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.9064e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0609987 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATAACCG TAGTGGGAAG TTATAACCTT GATATGACGT TCAAGCTCAA TCACTTTCCT 
ATACCTGGAG AGACAGTATT TGCTCAGGAA GTCAGAGTAG GTCATGGGGG AAAGGGCTCC
AATCAAGCAG TCTCAGCTTC TAGATTGGGA GCAAGAGCGA GGTTCGTAGG CGCAGTCGGA
AATGACGCGA ATGGTAAAAA TGCGATAAAC TTTCTCAGCT CTGAGGGCGT GGATACCTCA
TGTGTAAGGG TGAAGAATGC CCATACCGGA TCGGCTTACA TCTTACTCAA TGGTGGTGGA
GAGACTATGA TAGTGGTGAA CCGAGGGGCA AACTACGAAT TAACCCCAGA GGACCTAGAC
GGGTGTCTAG AGGGGAAAGT ATTGCTCACT CAGCTCGAGA TCAGGGAAGA TGTGGTGAAG
AGGGCACTGT CAGGGTTTTC CGGTATCAGG ATTTTGAACC CCGCTCCCGC AGAGTTAAAT
GATGTTGAAA TACTCAATTA TGTGGATATA TTAACCCCCA ATGAGGTTGA GTTCCAGGAG
ATCAGTAATT CAGATGATAT GTCGTATGGA GCACAGATAT TGCTAAAGAG GGTCAAACGT
GCTGTGATAG TGACTCTTGG AGAAAACGGT GCAATAATCT ATACCAAGAG CAAGTCGGTG
AGGATACCCA CAATCAAGGT AAACCCCGTG GATACCACTG GCGCAGGCGA CGTCTTTAAT
GCAGCTTTGG CGGTTTTCCT TGAAAGGGAT TACGACCTGG AGACCGCGGT TGAAAAGGCA
AACATTATAG CCTCGTACTC AGTTACCACT TATGGAGCGC TTGGACCAAC GTGGAAAGAG
ATCAAGGAAA AGTACCCGGA AATCCCACTC CCATGA
 
Protein sequence
MITVVGSYNL DMTFKLNHFP IPGETVFAQE VRVGHGGKGS NQAVSASRLG ARARFVGAVG 
NDANGKNAIN FLSSEGVDTS CVRVKNAHTG SAYILLNGGG ETMIVVNRGA NYELTPEDLD
GCLEGKVLLT QLEIREDVVK RALSGFSGIR ILNPAPAELN DVEILNYVDI LTPNEVEFQE
ISNSDDMSYG AQILLKRVKR AVIVTLGENG AIIYTKSKSV RIPTIKVNPV DTTGAGDVFN
AALAVFLERD YDLETAVEKA NIIASYSVTT YGALGPTWKE IKEKYPEIPL P