| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0145 |
|---|
| Symbol | |
|---|
| ID | 5104998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 116849 |
|---|
| End bp | 117349 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640506047 |
|---|
| Product | SSU ribosomal protein S18P alanine acetyltransferase |
|---|
| Protein accession | YP_001190246 |
|---|
| Protein GI | 146302930 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0456] Acetyltransferases |
|---|
| TIGRFAM ID | [TIGR01575] ribosomal-protein-alanine acetyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00901236 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGAAT CGGTAGAAGA GAAGAGAGGG TACACCATTA GGACTGTGCG GGCAGATGAT
ATAGATGCTA TTATAAAGAT TAACAGACTC ACGCTACCTG AGAATTATCC CTACTATTTC
TTCGTTGAAC ATGTGAGGGA TTGGGGAGAG GCTTTCTTTG TGGCAACAGT AGATGGGGAG
GTTGTAGGTT ACATCATGCC CAGGATAGAG ACGGGATTTA GCAACCTGAA GTCCTTCATT
CCCCTGGTGA GGAAGGGACA TGTAGTCTCG ATTGCCGTGC TCGAGGGTTA CAGAAGGAAG
GGAATAGGTA AGCAGTTGCT TACCTCCTCC ATGGAGAAGA TGAAACAGGT CTATGGGGCC
GAGGAAGTAT ATCTAGAGGT TAGGGTAAGT AATTACCCTG CAATATCATT ATATGAGAAA
CTTGGATACA AGAAAGTCAA GCTATTAAAG CATTATTACG CTGATGGAGA GGATGCCTAC
TTAATGGCAG CTCCTCTCTA A
|
|---|
| Protein sequence | MVESVEEKRG YTIRTVRADD IDAIIKINRL TLPENYPYYF FVEHVRDWGE AFFVATVDGE
VVGYIMPRIE TGFSNLKSFI PLVRKGHVVS IAVLEGYRRK GIGKQLLTSS MEKMKQVYGA
EEVYLEVRVS NYPAISLYEK LGYKKVKLLK HYYADGEDAY LMAAPL
|
|---|
| |