Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_0103 |
Symbol | |
ID | 5103911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 89327 |
End bp | 90052 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640506002 |
Product | 30S ribosomal protein S4e |
Protein accession | YP_001190204 |
Protein GI | 146302888 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1471] Ribosomal protein S4E |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000000259785 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000558992 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGACTCATA TTACTAGATT AGAGGCTCCC TGGTTCTTAA GAGCGAGTAA AAAGGAGTAT AAATGGACCG TTAGAGCCTC GCCTGGTCCC CATCCGTTAG GCAAGAGTAT CCCACTAGGT TTACTTCTGA GGGATTATCT CGCGTTTACT TCTTCGCTTA AGGAATCTAA GAAGATAATT TCAGACGGTA AGGTGCTAGT GGATGGAAGA GTAAGACGTG ATTACAAATA TCCTGTAGGT TTGATGGATG TGATTGCTAT TCCTCATGCT GACCTATATT TGAGAATAGT TCCAGATCGT GCTAGGCTTC TTAAACCTGT AAAGATCTCG GAAGAGGAAA GTAAATTCAA ACTCGTGAGG TTGCTGAACA AAACGCTCGT GAAGGGGGGT TTACTTCAAT TTAATCTCGA AGATGGGAGG AACCTTTTGA TAAGCAAGGA GTCCACTGAA ATGTTCAAGC TTCCTACCCT GACAACCTTA AAGATATCAA TTCCAAACCA GGAGATATTA GGTGTGTATG GGTTTAAGGA AAATGTATAT GTTATGGCTG TAGGTGGAAA GAACGCAGGA ATCATAGGTC AATTAAAGAG AATTCAGACC TCTCCTTACA AGACCAGGCG TTACTCCATT GTTGTAATTA GAAGCCCAGA CGGTTCTGAA TACGAGACTA ACCTTGAAAA TGCAATGGTT ATAGGAGAGG AAAAACCTGA GGTGAAGGTG GAGTAA
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Protein sequence | MTHITRLEAP WFLRASKKEY KWTVRASPGP HPLGKSIPLG LLLRDYLAFT SSLKESKKII SDGKVLVDGR VRRDYKYPVG LMDVIAIPHA DLYLRIVPDR ARLLKPVKIS EEESKFKLVR LLNKTLVKGG LLQFNLEDGR NLLISKESTE MFKLPTLTTL KISIPNQEIL GVYGFKENVY VMAVGGKNAG IIGQLKRIQT SPYKTRRYSI VVIRSPDGSE YETNLENAMV IGEEKPEVKV E
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