| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0088 |
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| Symbol | |
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| ID | 5104666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 78253 |
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| End bp | 79263 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640505987 |
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| Product | 3-isopropylmalate dehydrogenase |
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| Protein accession | YP_001190189 |
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| Protein GI | 146302873 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00287551 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000627763 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTAGGG TTTCGGTAAT TCCGGGCGAT GGAGTAGGAC CAGAAATATT TTTTGCAAGT
AAGAAAATCT TAGCGAAACT TGTGGAAACG TACTCTCTCG GAATAGAGTT TATTGAGGTG
GAGGCTGGGG ATTCGGCTCA AGCCAAGTAC GGGGAGGCAT TGCCAAAGAA TACTCTCAAG
GTAATAGAAT CGTCTGACAT GATACTTAAG GGCCCAGTAG GCGAGTCAGC CATGGACGTA
GTGGTAAAGT TAAGGCAGAT GTATGATATG TACGCCAATC TGAGGCCTGC TAAATCACTT
CCAGGAGTTC CCAACAAATA CGGAAACGTG GATATCCTAA TAGTTAGGGA GAACACTGAG
GATCTCTATA AGGGGTTCGA GCATGAAATC TCAGAAGGAG TCGCTGTTGG ACTTAAGGTG
ATATCAGCTA TGGCTTCCAC CAGGATAGCC AACGTTGCGC TGGATTATGC AAAGAGGAGA
AGAAACAAGG TTACCTGCGT TCACAAGGCT AACGTGATGA GGATAACAGA TGGGTTGTTT
GCAAGGTCCT GTCGTTCCGT GCTAAAGGGG AAAGTAGAAT ATAACGAGAT GTACGTAGAT
GCGGCAGCGG CTAATCTAGT GAAGGACCCA AACATGTTTG ACGTCATTAT CACCACGAAC
ATGTACGGAG ATATACTGAG CGACGAGGCT TCACAAATAG CTGGAAGCTT AGGCTTAGCT
CCCTCGGCAA ACATTGGGGA AAGGAAGTCG CTATTTGAAC CCGTTCATGG AGCTGCCTTC
GACATAGCTG GGAAGGGAAT TGTGAACCCA ACAGCTTTTC TGCTCTCCGT GAGTATGATG
CTGGAACGCA TGTATCAACT AAGTAAGGAT CAGAGATATT TACAGGCCTC ACAATCACTT
ACTAACTCGA TTTACAAGGT TTATAGCGAG GGTAAAAATC TCACGCCCGA TGTGGGTGGA
AGCTCCAAGT TAAGTGACAT AATTGACGCG ATATATTCGA AGCTAACATA G
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| Protein sequence | MFRVSVIPGD GVGPEIFFAS KKILAKLVET YSLGIEFIEV EAGDSAQAKY GEALPKNTLK
VIESSDMILK GPVGESAMDV VVKLRQMYDM YANLRPAKSL PGVPNKYGNV DILIVRENTE
DLYKGFEHEI SEGVAVGLKV ISAMASTRIA NVALDYAKRR RNKVTCVHKA NVMRITDGLF
ARSCRSVLKG KVEYNEMYVD AAAANLVKDP NMFDVIITTN MYGDILSDEA SQIAGSLGLA
PSANIGERKS LFEPVHGAAF DIAGKGIVNP TAFLLSVSMM LERMYQLSKD QRYLQASQSL
TNSIYKVYSE GKNLTPDVGG SSKLSDIIDA IYSKLT
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