| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0078 |
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| Symbol | |
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| ID | 5104656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 70366 |
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| End bp | 71208 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640505977 |
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| Product | exosome complex RNA-binding protein Rrp42 |
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| Protein accession | YP_001190179 |
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| Protein GI | 146302863 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2123] RNase PH-related exoribonuclease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.175337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00423326 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTATGA CACCAACAAA CGAGAATGTA ATCCCACTAA TAAAGAAGGA AAGCATAATT
GCTCTACTGG AAAGAGGTAC TAGAAGTGAC GGAAGGAAAT TCACAGATTA CAGGCCTTTA
TCTATTACTT TGGGATATGC GAAGAAGGCT GATGGATCTG CCCTAGTGAA GCTGGGAGAT
ACAACCGTTC TAGCAGGAGT CAAGGTAGAG GAAGACGAAC CATATCCAGA CACGCCCAAT
CAAGGAAACC TTGTGGTTAA CGCTGAGCTA CTTCCCTTAG CCTATGAAAC CTTTGAGCCT
GGCCCCCCTG ATGAGAATGC TATAGAACTA TCTAGGGTGG TAGATAGGAG CCTTAGGGAT
TCAAAGGCAG TTGATCTATC AGGGCTGGTC ATAGAGCCCG GCAAGAAAGT GTGGACTGTA
TGGGTTGACA TTTCAGTTTT GGATTACGGA GGAAACGTGT TGGACGCTTG CACCATTGCG
GCCGTAGCTG CACTTTACGA CGCTAAGTTA CCCAAGGTAG TGAGAGAAAA CGATAACATA
ATCATACAAA AAGAGGAGAA GGTCACTCCA CTCCCAATTA AGTACCCTGT TGTTACCGTT
TCCGTGGCAA AGATAGGAAA GTTTCTCGTG GTGGATCCAG ACCTAGAAGA AGAGGGTATA
ATGGACGCTA AAATATCATT TTCCTACATA CCCAGCGGCA ATATCGTTGG TATACAGAAG
TCAGGTGAAG GGAGTTTCAG CCAGCAAGAG GTGGAAGTGG CGGAGGGAAT GGCATCTGCT
ACTAGTCAGA AGTTATTAGA AGAGCTTAAA AGTCTCATAG GAATTGGAAA AGGTGAGTCG
TAA
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| Protein sequence | MSMTPTNENV IPLIKKESII ALLERGTRSD GRKFTDYRPL SITLGYAKKA DGSALVKLGD
TTVLAGVKVE EDEPYPDTPN QGNLVVNAEL LPLAYETFEP GPPDENAIEL SRVVDRSLRD
SKAVDLSGLV IEPGKKVWTV WVDISVLDYG GNVLDACTIA AVAALYDAKL PKVVRENDNI
IIQKEEKVTP LPIKYPVVTV SVAKIGKFLV VDPDLEEEGI MDAKISFSYI PSGNIVGIQK
SGEGSFSQQE VEVAEGMASA TSQKLLEELK SLIGIGKGES
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