| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0076 |
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| Symbol | |
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| ID | 5104654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 68918 |
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| End bp | 69661 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640505975 |
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| Product | exosome complex RNA-binding protein Rrp4 |
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| Protein accession | YP_001190177 |
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| Protein GI | 146302861 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1097] RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.141072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00451109 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCACAG AAAACAAGAT ATATCTACAG GATAGGACCG TGGTAGTCCC TGGAGATCTA
ATAGCTGAGG GAAATTTTCA AATACCATGG TCTCCTTACG TAATTAAGCA GGGAAACAAG
TACTACGCTT CGGTTATTGG AGTAGTTGAG GTTAAGGATT CTATCTTTGA AGTGATTCCT
CTGGAAGGCT CCCACTATTA TCCCAGAATA GGGGATACTG TGATAGCGTT GGTCGAGGAT
GTAGAACTGT ATGGTTGGAC TACTGACATC AAAGCTCCCT ACTCTGCTTA CCTACCAGCA
TCGTCTCTTT TAGGAAGGCC AGCCAATGTC GGTGAAGATC TAAGGCGTTA TATAGATGTG
GGGGATTACG TGATTGCGAA GGTTGAGAGC TTTGATAGAA CTAGCGATCC TGTTCTATCA
GTGAAGGGAA AGGGACTAGG GAGAGTTTCA TCTGGTACGG TTATTGATAT CCTTCCAGTC
AAGGTTCCTA GGGTTGTGGG AAAGGGAAAG AGCATGTTGG AGACTTTGAG CACAGAGACC
GGATGCGATA TCCTTGTGGC TCAGAATGGG AGGGTACTAG CCAACTGTCC ATCAAAGGAA
AAGGAAAATG TTCTAATAAT GGCCATCAGG ACCATTGAGC GTGAGTCCCA CACCAAAGGA
TTGACTGATA GAATTAAAAA ACTAATAAAA GAATCACTAG GTGATAACAG TGTTACAAGT
TCAGAAGCCC AAACTAATAC TTGA
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| Protein sequence | MSTENKIYLQ DRTVVVPGDL IAEGNFQIPW SPYVIKQGNK YYASVIGVVE VKDSIFEVIP
LEGSHYYPRI GDTVIALVED VELYGWTTDI KAPYSAYLPA SSLLGRPANV GEDLRRYIDV
GDYVIAKVES FDRTSDPVLS VKGKGLGRVS SGTVIDILPV KVPRVVGKGK SMLETLSTET
GCDILVAQNG RVLANCPSKE KENVLIMAIR TIERESHTKG LTDRIKKLIK ESLGDNSVTS
SEAQTNT
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