Gene Msed_0056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0056 
Symbol 
ID5104634 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp51863 
End bp52117 
Gene Length255 bp 
Protein Length84 aa 
Translation table11 
GC content48% 
IMG OID640505951 
ProductDKCLD domain-containing protein 
Protein accessionYP_001190157 
Protein GI146302841 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.477818 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTTT CTCCCTTCGT GGAAAGGATA GACAAGTTTT GTGGTTATAA TCAACCCTGG 
GAAGTTCGGA AGGATTACGT TCCGGCTGGG GATTTCGGAG TCCAGCCTGA TAAGAGAACT
ATCAAGGACC TCATAAATAC CTCTATTATT AACGTGGATA AGCCCCCTGG GCCAACTAGT
CATGAAGTGG CCTTCTGGGT AAAGACCATG TTTAACCTAC CCAGGGTGGG ACACGGAGGG
ACCCTAGAGC CCTAA
 
Protein sequence
MDFSPFVERI DKFCGYNQPW EVRKDYVPAG DFGVQPDKRT IKDLINTSII NVDKPPGPTS 
HEVAFWVKTM FNLPRVGHGG TLEP