Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_0054 |
Symbol | |
ID | 5104632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 48813 |
End bp | 51530 |
Gene Length | 2718 bp |
Protein Length | 905 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640505949 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_001190155 |
Protein GI | 146302839 |
COG category | [R] General function prediction only |
COG ID | [COG1201] Lhr-like helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.68416 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTCAG TATCTCAAGA GTTTATCTCT AGGCTACAAT CTCTAGGATA CAGGGAACTT ACACCCATTC AGAAGCTGGC AATTCCTAGT ATTCTAAAGG GCAAACACAC ACTGGTCATA GCTCCTACAG GTTATGGTAA GACGGAAGCT GCCATAATTC CAGTAATGTA TCAGATCTTT GCCAAGGGAT ATGAAAGGAT ATCAGCGCTT TACATTACTC CCTTAAGGGC ACTCAACAGG GATCTGGAAG GGAGATTGAA GAGCTTTAGT CAGACCTTTG GAATTAGGGT AGCAACTAGA CATGGGGACA ACTCCAGAAA GGAGAGAAGG GAGATCATCC TTAATCCTCC AGATCTTCTC ATTACAACAC CTGAGACCCT ACTCTATCTA ATCGTGGATA AGAGGGTTAA GAAGCTACTA GCTAACCTCA AATGGGTTAT CATTGACGAA TTGCAAGAAA TGCTTGACCA GAAGAGGGGT TATGAGCTAT CTGTGGTACT TCAACGCCTC AAGAGGATCT CCAGAAACCC GAGATTTATT GGCCTCTCCG CAACTATCAG CGACGTTGAA CTGGCGAAGT CCTATCTGAG CCTAGACGAG GAGGTCGAGG TTGCCAAGGT AGATGGGAGG AAGGACACGG AAATTCTCAT TGAGACCCCA GAGCCCTCAC AGGAGGTCGT TGATCTAGCG GTAAAGAGAG GAATGGACCC CATACTGCTA GCTAGATTAC TCAGGCTTAA GGACGTAATA GAGAAAAATA GGCCAGTTCT CATTTTTACC AACACAAGGG AGACCGCAGA ATTCCTTGCC AATCAACTAC AAACCATGTT CAATCTGAGG GTTGCAACCC ATCACGGTTC GCTCTCCAAG GAGATTAGGA CTAACATGGA GTCCAGTTTT AAGGCAGGTG AGCTGGACGC AATTGTTGCG ACGTCAAGCC TGGAACTGGG TATAGACATA GGTACTATTT CCCTAGTGGT TCAGTACATG TCTCCAAGAC AGACCATAAG GCTTCTACAG AGGGTTGGGA GGAGCGGACA TTCCCTTAAC AGGAAGGCTA GGGGACTCGT CATCCCTGGG AATTACATGT ACGACGTACT TGAATGTAAG GCTATTACGG AACTATCTAA GTCCTATTTA GAGCCCATGA TAAAGGAGGA GAACCCCCTG GACGTATTGG CCCATCAGAT AGCAGGGATG GTGATAGAGG GACCGCTTCT CATGTCAGAT GCACTTGAAA TATTTAGGGG CTCCCCCTAC TTCAGAAACC TCACCCCAGA ACTCCTTGAG GCAGTCGTGG AACAACTTGA GGCAGAGAGG GTAGTGAAAA GGGAGGGAGA GGTCCTGAAA CCCTCTAGGA GGACTTGGAA GTACTATTAC ACTGTGAACA TGATTCCAGA CTCCAACATG TCCTACCTCG TCATTAACAC CAACACCAAC TCCAGGATAG GAAATCTAGA TTTCGATTTC GTGTCAATTC TAGACGAGGA TAGCGTTTTC GTCCTAGGAG GGAGACTTTG GAGAGTGGTG TCCATAGAGG AGGGTAAGGT CTTTGTGTCC CCAGCTGAAC TCAAGAAGGG TGATCTACCC AGTTGGTTCG GCGAGGCCAT ACCAGTGGAG AAGGAGGTCT CAATGAAGGT TTACGAATAT CTAACCGAAT CCTTTGCGGG AAGAAGGGAG ATCGAGCCTG AACTCAAGGC CAAGATAGAG AGTCACCTCT CGAGGAATTA CCCAGCCCTA AGGAGGGATT TGATCCTGGT GGAACTAGTG AACTCGGATC TCCTTGTAAT CCACTCTCCC TTCGGTACTA GGGGTAACAA CACCTTGGGG TCACTCATAT CCGCTGTTCT CTCCTCCATG GGATACAGAA CCTCGTTCAG AAGCGACCCC TATCATGTGG TGTTAACCTC CATGGTGCCT CTAGATGTGG GGGTAGTGGA GGACGTCCTG GGCAAGGTTA AATCCATGGA CCCTGAATAT GCCTCCAGGT TACTGGAGCA GCAAGTCGTT AATGAACCTG AATTCAAGTG GATTTTACTC ATAGAGGCAC AGCGTTTTGG TGCCATAGAG AAGGGAACCG AAATCAAACT GGGCCATTAC GTCCTGAGGG CCTACATTGA CACCGTGATA GGGAAAGAGG CGATCAAGGA GTTTATGCTA AGATTTCACG ATGTATCTAT CCTTTCAATT CTCAAGGGGA TGGCATGGGA AGTCGTGGAA GTTCCTTCGC CATCTCCTCT TGCCCAGGAG TTTCTCGATC GTCTCCTTGT CTTCACCTCC ATAGATGACA AACCAGTTAT GGTCGAGGTA TTCAAGAGGA GACTCCTGAA CAAGGAGATA CTTTCAATCT GCCTATTATG CGGTTGGAAC TCCAGGGTGA AGGTATCCGA TGTCCCAGAG AGATGCCCCA AATGCGGGTC GGTGTTCATT ACCTCAACCT TTCCAGATGA CAGGGAAGCT CTCGATATCG TGAAGAGAAA CATAAGGGGA GAAAAGCTCA ACAGAAAGGA ACAGAAAAGG CTCTCAGAGC TAAAGTCCAT AGCCTCGCTT TACTCGAATT ATGGAAGGAC AGCCTTTCTG GCCCTTGCCG TTAGGGGAAT AGGCCCTACT AACCTAGGCA GAGTCCTGAG GTCCCTCTCC AAAGGAGAGG ATAAGTTTTA TCAAGCTCTC ATGGAGGAGG AGAGGAAGTT CATCAGGTAC AGGAAGTACT GGCAGTAA
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Protein sequence | MSSVSQEFIS RLQSLGYREL TPIQKLAIPS ILKGKHTLVI APTGYGKTEA AIIPVMYQIF AKGYERISAL YITPLRALNR DLEGRLKSFS QTFGIRVATR HGDNSRKERR EIILNPPDLL ITTPETLLYL IVDKRVKKLL ANLKWVIIDE LQEMLDQKRG YELSVVLQRL KRISRNPRFI GLSATISDVE LAKSYLSLDE EVEVAKVDGR KDTEILIETP EPSQEVVDLA VKRGMDPILL ARLLRLKDVI EKNRPVLIFT NTRETAEFLA NQLQTMFNLR VATHHGSLSK EIRTNMESSF KAGELDAIVA TSSLELGIDI GTISLVVQYM SPRQTIRLLQ RVGRSGHSLN RKARGLVIPG NYMYDVLECK AITELSKSYL EPMIKEENPL DVLAHQIAGM VIEGPLLMSD ALEIFRGSPY FRNLTPELLE AVVEQLEAER VVKREGEVLK PSRRTWKYYY TVNMIPDSNM SYLVINTNTN SRIGNLDFDF VSILDEDSVF VLGGRLWRVV SIEEGKVFVS PAELKKGDLP SWFGEAIPVE KEVSMKVYEY LTESFAGRRE IEPELKAKIE SHLSRNYPAL RRDLILVELV NSDLLVIHSP FGTRGNNTLG SLISAVLSSM GYRTSFRSDP YHVVLTSMVP LDVGVVEDVL GKVKSMDPEY ASRLLEQQVV NEPEFKWILL IEAQRFGAIE KGTEIKLGHY VLRAYIDTVI GKEAIKEFML RFHDVSILSI LKGMAWEVVE VPSPSPLAQE FLDRLLVFTS IDDKPVMVEV FKRRLLNKEI LSICLLCGWN SRVKVSDVPE RCPKCGSVFI TSTFPDDREA LDIVKRNIRG EKLNRKEQKR LSELKSIASL YSNYGRTAFL ALAVRGIGPT NLGRVLRSLS KGEDKFYQAL MEEERKFIRY RKYWQ
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