| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0050 |
|---|
| Symbol | |
|---|
| ID | 5105189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 45010 |
|---|
| End bp | 46110 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640505945 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_001190151 |
|---|
| Protein GI | 146302835 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.352004 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.512598 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGCTT CTTCAAGAAT AGTAAACGTA GAATATGCTC TACTGGGTCA AGATTTAGAA
CTGGTACACA AAATTCACCT GGAGATCAGT GACGGGATAA TCTCCCACAT AGGAAAGGGA
TGGGATGTTA AGGGCGAATC CTACCCTAAT TCCCTTCTCA TGCCTGGGCT GGTAAACTCC
CACGTTCATA CCTTCGATGG GATCGCACCT GAGTTAGGAT GGAACCTAAC CCTTAAGGAG
GTGGTAGGCG ACCCTCATAG CGAGAAGTAT AGAGTACTCT CCCTGAGGAG CCTCCCTGAG
TTAAGGGCCT CAACCCTTAA CTTCCTTAAC AGGTCCTTGG AGCTTGGGAT TTTCACTGTA
ATCGACTTCA AGGAAATGGA TATCAATGGT GCAAAAATCT CGAAAGAGGT TAAGGAAATC
TCACCCATTA ACTACGTGAC TCTGGGGAGA TTGGACGGTG AGATAACAAG GGATAGACTT
GAAATCCTCA AGGAGTTGGT GGACGGGTAT GGGGTAAGTA GCGTATCCAT AGGGATGGAA
AAGCTTAGCC TCATTCGAGA GGTATTTAGG GATAAGATGA CCGCTATCCA TGTTTCTGAA
ACGCTTAGGC ATAACTTGGC CTCAGACCTT GAGACCTCTC TTTCCACTCT TAAACCTGAT
ATGGTGGTTC ATGGCATCCA TCTATCTGAG GAGGAGATGG AACTCTTGGC AGAAACGGAC
ACCAAACTGG TTATATGTCC TCGAAGTAAC CTATGGTTCT CAACGGGTAT TCCCAACATT
CCCATGATGA TAAGAAAAGG GGTTAGACTA CTAATCGGAA CCGACAACGC CGGGATCACC
GATCATGATC TCTGGAAGGA GTTAGAGGTT GCATTACTTC TATCGCGACT TCTGGATCCA
GGAAGTGATT TTTCCAGGGA TATCCTTAAG TCTGCTACCG TTAACCCTGG AAAAGGGGTT
TATCCAATAG AGGAGGGAAA TAGGATGACA GGAATAATCA TGGGGCCACT CCCCAGGTTC
GAAGTCTCAA ATAACAGGTA TATGGCACTA ATCAAGGAAC CTGGAAAAAT AATTAGAGTC
TTGGGGCTAC CCAAAATCTA A
|
|---|
| Protein sequence | MEASSRIVNV EYALLGQDLE LVHKIHLEIS DGIISHIGKG WDVKGESYPN SLLMPGLVNS
HVHTFDGIAP ELGWNLTLKE VVGDPHSEKY RVLSLRSLPE LRASTLNFLN RSLELGIFTV
IDFKEMDING AKISKEVKEI SPINYVTLGR LDGEITRDRL EILKELVDGY GVSSVSIGME
KLSLIREVFR DKMTAIHVSE TLRHNLASDL ETSLSTLKPD MVVHGIHLSE EEMELLAETD
TKLVICPRSN LWFSTGIPNI PMMIRKGVRL LIGTDNAGIT DHDLWKELEV ALLLSRLLDP
GSDFSRDILK SATVNPGKGV YPIEEGNRMT GIIMGPLPRF EVSNNRYMAL IKEPGKIIRV
LGLPKI
|
|---|
| |