| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0041 |
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| Symbol | |
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| ID | 5105180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 38432 |
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| End bp | 39739 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640505935 |
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| Product | elongation factor 1-alpha |
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| Protein accession | YP_001190142 |
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| Protein GI | 146302826 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG5256] Translation elongation factor EF-1alpha (GTPase) |
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| TIGRFAM ID | [TIGR00483] translation elongation factor EF-1 alpha
[TIGR00485] translation elongation factor TU |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000171412 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.193391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTCAAA AGCCACACTT GAATTTGATT GTTATAGGAC ACGTAGACCA CGGAAAGAGC
ACTCTAGTTG GAAGACTTTT AATGGATAGG GGTTTCTTGG ATGAAAAGAC CATTAAAGAG
GCAGAGGAAG CTGCAAAGAA GCTAGGAAAA GAGTCAGAGA AATACGCTTT CCTTCTAGAT
AGGCTCAAGG AGGAGAGGGA AAGAGGTGTT ACAATCAACC TAACATTCAT GAGATTCGAG
ACAAAGAAGT ACTTCTTTAC TATAATTGAT GCTCCTGGGC ACAGGGACTT CGTCAAGAAC
ATGATCACTG GAGCTAGTCA GGCCGACGCA GCAATATTGG CAGTTTCGGC TAGAAAAGGT
GAATTTGAGT CAGGAATGAG CCTAGAGGGT CAGACTAGAG AGCACATAAT ACTTGCCAAG
ACCATGGGTC TTAACCAAGT TATCGTAGCT ATCACAAAGA TGGACGTAGC AGAACCGCCA
TACGATCAGA AGAGATATAA TGAGATAAAG GAGACCATCG AGAAGTTCAT GAAGTCCTTC
GGATTTGACA TGTCTAAGGT TAAGTTCATC CCAATTGTCT CAATCACTGG TGAGAATGTA
ACCAAGAGAT CAGAAAACAT GAAGTGGTAT AACGGACCCA CGCTGGAGGA AGCCCTAGAT
ATGTTGGAGA TCCCACCGAA GCCAGTTGAC AAGCCTCTAA GGCTACCCAT ACAGGAAGTC
TATTCAATAT CAGGTGTTGG TACCGTACCA GTCGGCAGAG TTGAGAGCGG TGTCATGAAG
GTGGGCGATA AGATAGTTTT CATGCCTGCA GGGAAATCCG CAGAGGTCAG ATCTATCGAG
ACTCACCACA CTAAGTTGGA GAAAGCAGAA CCAGGAGACA ACATTGGTTT CAACGTGAGG
GGTATAGACA AGAAAGATGT TAAGAGGGGA GATGTAGTAG GTCATACTAC TAACCCACCC
ACAGTTGCTG AGGAATTCAC GGCGAGGGTA ATAGTTGTGT GGCATCCAAC AGCTCTGGCA
GTTGGTTATA CCCCGGTCGT TCACGTTCAC ACAGCGAGCA TTGCTTGTAG GGTTTCGGAG
ATAGTAGCAA GATTGGATCC GAAGACCGGT AAGGAGGCTG AAAAGAACCC ACAATTCATT
AAGCAAGGAG AGTCGGCTAT AGTCAAGTTC AAGCCCATAA AGCCGTTATG TGTTGAGAAG
TTCAGCGACT TCCCGCCATT AGGAAGATTT GCTATGAGGG ATATGGGCAA GACTGTAGGT
GTGGGAGTAA TAAACGACGT TAAGCCCAGT AAGATAGAGA TAAAGTGA
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| Protein sequence | MSQKPHLNLI VIGHVDHGKS TLVGRLLMDR GFLDEKTIKE AEEAAKKLGK ESEKYAFLLD
RLKEERERGV TINLTFMRFE TKKYFFTIID APGHRDFVKN MITGASQADA AILAVSARKG
EFESGMSLEG QTREHIILAK TMGLNQVIVA ITKMDVAEPP YDQKRYNEIK ETIEKFMKSF
GFDMSKVKFI PIVSITGENV TKRSENMKWY NGPTLEEALD MLEIPPKPVD KPLRLPIQEV
YSISGVGTVP VGRVESGVMK VGDKIVFMPA GKSAEVRSIE THHTKLEKAE PGDNIGFNVR
GIDKKDVKRG DVVGHTTNPP TVAEEFTARV IVVWHPTALA VGYTPVVHVH TASIACRVSE
IVARLDPKTG KEAEKNPQFI KQGESAIVKF KPIKPLCVEK FSDFPPLGRF AMRDMGKTVG
VGVINDVKPS KIEIK
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