Gene Msed_0040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0040 
Symbol 
ID5105179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp37794 
End bp38378 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content45% 
IMG OID640505934 
Product30S ribosomal protein S7P 
Protein accessionYP_001190141 
Protein GI146302825 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0049] Ribosomal protein S7 
TIGRFAM ID[TIGR01028] ribosomal protein S7(archaeal)/S5(eukaryotic) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000291032 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0943991 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAGTT ACGAGCTATC AAAACTGGAT ATAAGGATAT TCGGCAAATG GGATACCAAA 
GTAGATATAC GAGACCCTAG TTTGAAGAAG TATATCTCAC TCATGCCAGT ATATCTACCT
CACTCGGGAG GAAGGCATGA GCATAGGAGG TTTGGAAAAG CTAGGGTCTC CATCGTGGAG
AGGTTGATAA ATGAGCTGAT GAGGCCGGGA AAGAATAAGG GAAAGAAGAT CCTGGCATAT
AACATTGTGA AGGCTACCTT TGAGCTGATT AATGCTAGAA CAGGTCAAAA TCCTCTGCAG
GTATTAGTTA GGGCTATTGA GAACTCAGCG CCTAGGGAAG AGGTGACAAG GATCATGTAC
GGTGGAATAG TTTATTACGT CGCTGTTGAC GTCTCTCCCC AAAGAAGAGT GGATATAGTT
CTAAGGAACC TAGTAGATGG TGCTAGACAG GCTGCGTTTA ACAATCCGAA GCCCATAGAG
GAGGCATTGG CTGATGAGCT AATCGCTGCT GCCAACGGTG ATAACAGAAG CTTCGCCATA
AGGAAGAAAG AAGAGATGGA AAGGATAGCC CTGAGCTCCA GATAA
 
Protein sequence
MDSYELSKLD IRIFGKWDTK VDIRDPSLKK YISLMPVYLP HSGGRHEHRR FGKARVSIVE 
RLINELMRPG KNKGKKILAY NIVKATFELI NARTGQNPLQ VLVRAIENSA PREEVTRIMY
GGIVYYVAVD VSPQRRVDIV LRNLVDGARQ AAFNNPKPIE EALADELIAA ANGDNRSFAI
RKKEEMERIA LSSR