Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_0030 |
Symbol | |
ID | 5105169 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | - |
Start bp | 25323 |
End bp | 27116 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640505924 |
Product | translation initiation factor IF-2 |
Protein accession | YP_001190131 |
Protein GI | 146302815 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00491] translation initiation factor aIF-2/yIF-2 |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0331491 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCAAAGA CAGAAGTGAG ACTTAGACAG CCAATTGTCG TGGTATTAGG TCATGTTGAT CACGGTAAGA CTACCCTTTT GGACAAGATT AGGGGAACTG CAGTTGTTAA GAAGGAACCA GGCGAAATGA CCCAGGAGGT TGGGGCTAGT TTCGTCCCAA GCAGCGTTAT CGAAAAAGTT GCTCAACCCT TAAAAGGTAT AATCCCCGTG AAGCTTGAGA TTCCTGGATT GCTTTTCATA GACACTCCAG GTCATGAGCT TTTCTCAAAT TTAAGGAGGA GAGGTGGAAG CGTAGCTGAT ATTGCAATTC TAGTGGTAGA CATAACAGAA GGATTTCAGA AACAGACCAT AGAATCTATT GAGATCTTAA AAGATAAGAA GGTACCCTTC CTAGTCGCTG CCAATAAAAT AGACAGGATA CCTGGATGGA GGCCCATAGA GAACGAAACG TTTACAAAAT CCTTTAGATC TCAATCACAG AGTGTTCAGA AAGCCCTAGA TAATTATGTA TACAAACTGG TAATGCAGTT GGCAGAAATG GGCTTTAACG CAGAGAGATT TGACCGAGTA AGGGACTTCA CACGTTACGT ATCCATTGTT CCAGTTTCTG GGAAGACTGG TGAAGGCTTA CCTGAATTGC TGGCGCTTTT AGCGGGTCTG ACACAGCAAT ATCTTAAGAC AAGACTAAGG GCAGTGGAAG GACCTGCTAA AGGGGTAATT CTCGAGGTCA AGGAGGAGCA AGGGTTAGGA CATACTATCG ATGTGATAAT CTATGATGGG ATACTAAGAA AAAGTGACAC GATAGTTCTG GGCGGAATAA ACGGAGTAAT AGTCACTAAA ATTAGGAACA TCCTACTACC TGCACCCCTA CAGGATATGA GAATGACTAG ATCAGGTTAT AGGAGCATAG ATGAAATATC CGCGGCAGCA GGAGTTAAAA TCTCAGCACC GGGCCTTGAG GAGGCTCTTG CAGGATCCCC CCTATACGTG GCTAACGATG AGGCCAAACT TCAGGAAGCT AGAAAACTTA TTGAAGAGGA GCTATCTAAG GTGAGGTTTT CTAAAAACTC CACAGGTATA GTGGTAAAGG CAGATAGCTT AGGATCACTG GAGTCCTTGG TCGCAGGATT CGAAAAAATA GGAATTCCAG TAAGAGTGGC TGATATAGGC CCAATCACTA AGAGGGATTT GATCGAGGCT GAGCTCTCAG CCAAGGAGGT TGAGGAGTAC GGAATAATTG CAGCCTTCAG AGTAAAACCC ATCCCAGGAT TAGACACATC TAAGGTTAAG ATAATTTACA ACGATATAAT CTACCAGTTG ATAGACGACA CTATCAAATA CATTGAAGAT CTCAGGGAGA GGAGAAAAAG GAGGACCCTG GATTCCCTTG TGTTACCAGG AAAGATCAAG ATCTTACCGG GATATGTTTT TAGAAGAAGT GATCCGGCTA TAGTAGGTGT AGAAGTTTTA GGAGGCGTAG TGAGGCCAAA GTATCCCTTG ATAAGAGAGG ATGGACAGAG AGTGGGAGAG GTCTTAGCTA TTCAGGATAA TAAGAAAAAC ATTGAGAGAG CCACAAAGGG GATGGAGGTT TCCATGTCAA TAAAAGGAAA CATTATGATA GGTAGACAGG TCCAGGAGGG AGACGTTCTG TACACCGATG TTCCTCAAGA GGACTTAGAG ATCCTCTTCA AGAATTATAA GGACTCGATC ACAGAGGATA TGATGGAGGT AATCAAGGAG CTAATAAAGA TAAAAAAGGC CGAGAATCCC CTCTATGGTA TTTTCATTCA GTGA
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Protein sequence | MSKTEVRLRQ PIVVVLGHVD HGKTTLLDKI RGTAVVKKEP GEMTQEVGAS FVPSSVIEKV AQPLKGIIPV KLEIPGLLFI DTPGHELFSN LRRRGGSVAD IAILVVDITE GFQKQTIESI EILKDKKVPF LVAANKIDRI PGWRPIENET FTKSFRSQSQ SVQKALDNYV YKLVMQLAEM GFNAERFDRV RDFTRYVSIV PVSGKTGEGL PELLALLAGL TQQYLKTRLR AVEGPAKGVI LEVKEEQGLG HTIDVIIYDG ILRKSDTIVL GGINGVIVTK IRNILLPAPL QDMRMTRSGY RSIDEISAAA GVKISAPGLE EALAGSPLYV ANDEAKLQEA RKLIEEELSK VRFSKNSTGI VVKADSLGSL ESLVAGFEKI GIPVRVADIG PITKRDLIEA ELSAKEVEEY GIIAAFRVKP IPGLDTSKVK IIYNDIIYQL IDDTIKYIED LRERRKRRTL DSLVLPGKIK ILPGYVFRRS DPAIVGVEVL GGVVRPKYPL IREDGQRVGE VLAIQDNKKN IERATKGMEV SMSIKGNIMI GRQVQEGDVL YTDVPQEDLE ILFKNYKDSI TEDMMEVIKE LIKIKKAENP LYGIFIQ
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