| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0026 |
|---|
| Symbol | upp |
|---|
| ID | 5105165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 23756 |
|---|
| End bp | 24403 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640505920 |
|---|
| Product | uracil phosphoribosyltransferase |
|---|
| Protein accession | YP_001190127 |
|---|
| Protein GI | 146302811 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0035] Uracil phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00981557 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTAT TTTTACTTGA TAAGCCTTTA TTTTTACATA TATTAACTCA GTTGAGAGAT
ATTAAGACAG ATCAAATAAT GTTTAGGAAA GGCATGGTCA GATTAGGAAG GCTTATTGGG
TACGAAATAG CCAACCACCT CGATTTCGAT ATAGTTAAGG TGGTCACTCC GCTAGGAGTG
GAAGCAAAGG GGGTAGTAAT TAAAGACCTA GATAACATAA TGATCGTCAA TGTGTTAAGA
GCAGCTACAC CACTAGTTGA GGGGCTCTTG AAAGCATTTC CGGCAGCGAA GCAGGGTGTC
GTGGCCGCCT CCAGAAGGGA GATGGAAAGT TCCTCTCCAC CCACGGAGAT GGAAGTTGAA
ATAACATACA TGAAGATTCC AAAAATCTCA AAAAATGACA TCGCTATTAT TGCCGATCCT
ATGATAGCTA CCGCGAGCAC CATGATGAGG ATACTTGGCA TGGTATCTCA GCTTCAACCC
AAGAGAATAA TTATTGCATC TGTGATCGCG TCTGAATACG GAATAACCAA AATACGTAAC
AAGTATCCCG ATGTTGATAT CTTCACGGTG TCCATAGATC CTGAGATAAA TAACAGGGGC
TACATTGTGC CTGGGTTGGG TGATGCAGGT GACAGATCCT TCGGATGA
|
|---|
| Protein sequence | MAVFLLDKPL FLHILTQLRD IKTDQIMFRK GMVRLGRLIG YEIANHLDFD IVKVVTPLGV
EAKGVVIKDL DNIMIVNVLR AATPLVEGLL KAFPAAKQGV VAASRREMES SSPPTEMEVE
ITYMKIPKIS KNDIAIIADP MIATASTMMR ILGMVSQLQP KRIIIASVIA SEYGITKIRN
KYPDVDIFTV SIDPEINNRG YIVPGLGDAG DRSFG
|
|---|
| |