| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4620 |
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| Symbol | |
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| ID | 5106930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 5069826 |
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| End bp | 5071571 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640505890 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_001190098 |
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| Protein GI | 146309633 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCC AACGCTCGAT CCTGATCGTC GCCCTGGCAG TCGTGTCCTA CCTCATGGTC
CTGCAATGGA ACGAGGACTA TGGTCAGGCT GCCCTGCCGG CCGAGGTAAG TTCCTCGACC
GCCGCGACGC CCGCCCTGCC CGATACGCCT GCAGATACCG CCAGCACTGG CGGCGACGAC
ATCCCCACTG CCGTGGCCGA ACCCACTGCA GCTGCCGTTG CGCCGACTGC AGCGGCCAGC
GATGAGCTGA TCCGCGTCAA GACCGATGTG CTCGACCTGG CCATCGACCC GCGTGGTGGC
GACATCGTGC AGCTGCGTCT GCCGCAGTAC CCGCGTCGTC AGGACCGCCC GGACGTGCCG
TTTCAGCTGT TCGACAACGG CAGCGAGCGT ACCTACCTGG CCCAAAGCGG CCTGATCGGC
CAGAACGCGC CGGACAAGTC CAGCGGCCGC GCCCTGTGGT CCAGCGAGAA GCAGAGCTAT
GAAATGGCCG ACGGCCAGGA CAGCCTGGTG GTCGATCTCA CTTATAGCGA GAACGGCGTC
AGCTACATCA AACGCTACAG CTTCAAGCGC GGCCTCAACC CGCAGTGCTC GGCGCGCGAG
CAACAGCTGA AGAAGCCGGG CTGCGTCGAT CCGTCCGCCT ACCAGGTCGA TGTGCGCTAC
CTGATCGACA ACCAGAGTGA TCAGGCCTGG AGCGGCAACC TGTTCGCCCA GCTCAAGCGC
GACAACAGCG GCGACCCGTC CTCCACCACC GCCACCGGCA CCGCCACCTA CCTGGGCGCC
GCGCTGTGGA CCAGTGACGA GCCGTACAAG AAGGTGTCGA TGAAGGACAT CGACAAGCAG
TCCTTCAAGG AAACCGTGCA GGGCGGCTGG GTCGCCTGGC TGCAGCACTA CTTCGTCACC
GCCTGGGTAC CGAGCAAGGA CAGCACCAAT CTGGTCCAGA CCCGCAAGGA CAGCCAGGGC
AACTACATCG TCGGCTTCAC CGGTCCGGCC GTACAGGTCG CTGCCGGCGC GCAGGGCGAA
ACCGGCGCGA TCCTCTATGC CGGTCCCAAG CTGCAGGAGC ACCTGGGCAA GCTGTCCCCG
GGCCTGGAGC TGACCGTCGA CTACGGCTTC CTGTGGTTCC TGGCGCAGCC GATCTTCTGG
CTGCTGGAAG TGATCCACGG CCTGCTCGGC AACTGGGGTT GGTCGATCAT CGTCCTGACC
ATCATCATCA AGCTGATCTT CTTCCCGCTG TCGGCCGCCA GCTACCGCTC GATGGCTCGC
ATGCGCGCCG TTTCGCCGAA ACTGCAGGCG CTGAAGGAGC AGCATGGTGA CGATCGCCAG
AAGATGTCCC AGGCGATGAT GGAGCTGTAC AAGAAAGAGA AGATCAACCC GCTGGGCGGC
TGCCTGCCGA TCCTGGTGCA GATGCCGGTA TTCCTTGCCC TGTACTGGGT GCTGCTGGAA
TCCGTGGAAA TGCGTCAGGC CCCGTGGATG TTCTGGATCA CCGACCTGTC GATCAAGGAT
CCGTTCTTCA TCCTGCCGAT CATCATGGGC GCCACCATGT TCATCCAGCA GCAGCTCAAC
CCGACGCCGC CGGATCCCAT GCAGGCCCGC GTGCTGAAGC TGATGCCGAT CATCTTCACC
TTCTTCTTCC TGTGGTTCCC GGCAGGTCTG GTGCTGTACT GGGTGGTCAA CAACATCCTG
TCCATCGGTC AGCAGTGGTA CATTACGCGC AAGATCGAAG CCGCAGCGAA ACCGGCCAAC
GCCTGA
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| Protein sequence | MDIQRSILIV ALAVVSYLMV LQWNEDYGQA ALPAEVSSST AATPALPDTP ADTASTGGDD
IPTAVAEPTA AAVAPTAAAS DELIRVKTDV LDLAIDPRGG DIVQLRLPQY PRRQDRPDVP
FQLFDNGSER TYLAQSGLIG QNAPDKSSGR ALWSSEKQSY EMADGQDSLV VDLTYSENGV
SYIKRYSFKR GLNPQCSARE QQLKKPGCVD PSAYQVDVRY LIDNQSDQAW SGNLFAQLKR
DNSGDPSSTT ATGTATYLGA ALWTSDEPYK KVSMKDIDKQ SFKETVQGGW VAWLQHYFVT
AWVPSKDSTN LVQTRKDSQG NYIVGFTGPA VQVAAGAQGE TGAILYAGPK LQEHLGKLSP
GLELTVDYGF LWFLAQPIFW LLEVIHGLLG NWGWSIIVLT IIIKLIFFPL SAASYRSMAR
MRAVSPKLQA LKEQHGDDRQ KMSQAMMELY KKEKINPLGG CLPILVQMPV FLALYWVLLE
SVEMRQAPWM FWITDLSIKD PFFILPIIMG ATMFIQQQLN PTPPDPMQAR VLKLMPIIFT
FFFLWFPAGL VLYWVVNNIL SIGQQWYITR KIEAAAKPAN A
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