| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4555 |
|---|
| Symbol | |
|---|
| ID | 5107013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4994250 |
|---|
| End bp | 4995461 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640505826 |
|---|
| Product | PepSY-associated TM helix domain-containing protein |
|---|
| Protein accession | YP_001190034 |
|---|
| Protein GI | 146309569 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCCGA TTCTGGTTTT GCTGCACCGC TGGTGCGGCC TGTTCATCGC CCTGTTCCTG
TTCACCGCCG GCTTGACCGG CGCTGTCATT TCCTGGGATC ACGAACTGGA CGAATGGCTC
AACCCGCACC TGTTCGATGC GCAAACCGAA GGGCAGGCGC AGGACCCGCT GCAACTGGTG
GACGCCCTGG AAGCGCGCGA CCCGCGCCTG CAGGTGAGCT TCATGTCGCT GGCGCTGGAA
CCCGGCCATG CGCTGGGCAT CTTCGTCGAT CCGCGTATCG ATCCGGCCAC CGGCAAGGCC
TTCAAGCTCG GCTTCAACCA GCTCGGCATC GACCCGGTCA CTGGCGAGAT CCAGGGCCAG
CGCGAATGGG GGGCGATCTC CCTGAGTCGG GAGAACCTGC TGCCGTTTCT CTACAAGCTG
CATTACAGCC TGCATATCCC GGACGGCTTC GGCATCGAGC TGGGCATGCT GTTCTTCGGC
ATCGTCGCCA TCGTCTGGTG CATCGACTGC CTGGTGGCCC TGTGGCTGTC GTTTCCCAAC
CTGCGCAGCT GGCGCAAGTC GTTCGCCTTT CGCTGGAGCC AGGGCGGCTA CAAGCTGAAT
TTCGACCTGC ATCGTTCCGG CGGGGTATGG ATCTGGCTGT TGCTGCTGGT GCTGGCCGTC
ACCTCGGTGT CGATGAACCT GGAGCGGCAG GTGACCAGGC CGCTGGTCGA GCTGTTTTCG
CCGCTGACGC CCAGCCCCTT CGCCAGCCGC ACGCCGGTCA CCCTGGATGA GCAGATCGTG
CCGCTGATCG ACCGCCGCCA GGCCATCGCC GTGGCCGATG CCGAGGCGCG GCGGCTAGGC
TGGGATGCGC CTCCCGGCGG GCTGTTCCAT TCGGCGGAGT TCGGCGTGTA TGGCGTCGGC
TTCTACGAGC CGGGCGACGA TCACGGCGAT GCCGGGCTGG GCAACCCCTG GATCTACGTC
GACAGCCAGA CCGGCGAACT GGCCGGCGCG CACGTGCCGG GCACCGGCAG TGCCGGGGAT
ATCTTCCTGC AGGCGCAGTT CCCGCTGCAT TCCGGGCGCA TCATCGGTCT GCCGGGGCGC
ATCCTGGTGT CGTTGCTGGG CCTGGCGGTG GCGGGGCTGT CGCTGACGGG CGTGGTGATC
TGGGCGAAGA AGCGCCGTTC GCGCCTGCTC GCCGAGCAGC GCCTGCGCGG CGTTTCACAG
GCCATGACGT AA
|
|---|
| Protein sequence | MRPILVLLHR WCGLFIALFL FTAGLTGAVI SWDHELDEWL NPHLFDAQTE GQAQDPLQLV
DALEARDPRL QVSFMSLALE PGHALGIFVD PRIDPATGKA FKLGFNQLGI DPVTGEIQGQ
REWGAISLSR ENLLPFLYKL HYSLHIPDGF GIELGMLFFG IVAIVWCIDC LVALWLSFPN
LRSWRKSFAF RWSQGGYKLN FDLHRSGGVW IWLLLLVLAV TSVSMNLERQ VTRPLVELFS
PLTPSPFASR TPVTLDEQIV PLIDRRQAIA VADAEARRLG WDAPPGGLFH SAEFGVYGVG
FYEPGDDHGD AGLGNPWIYV DSQTGELAGA HVPGTGSAGD IFLQAQFPLH SGRIIGLPGR
ILVSLLGLAV AGLSLTGVVI WAKKRRSRLL AEQRLRGVSQ AMT
|
|---|
| |