| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4552 |
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| Symbol | |
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| ID | 5107010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4990023 |
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| End bp | 4991690 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505823 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001190031 |
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| Protein GI | 146309566 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAACG TCCCTTCGCA TGAAACGACA CCGCCATCCG CAGCGGAAAC CCACGACGGC
ATCCCGGCAC CGACCGGTGA AGCCAATCTG ATCGATACCG ACTACGTCAT CGGCCAGGAC
AACATCAAAG GCCAGTTCAT CTTCTCACTG GACATTCACG GCAAGGTCTT CACCATCTCC
GCGCTGGTCG CCATCGTCTT CGTGGTGCTG GCGCTGGCCC TGCAGAACCA GGTCGAGCCG
CTGTTCAGCG GTCTGCGCGA CTGGCTCACC CATCACATGG CCTGGTTCTT CATCGGCGCC
GCCAATGTCT TCGTTCTGCT CTGTCTCGGG CTGATCGTCT CGCCGCTGGG GCGGGTACGC
ATCGGCGGCA AGGAGGCGAC TCCCGACTAC ACCTACGTGG GCTGGTTCTC CATGCTCTTC
GCCGCGGGCA TGGGCATCGG CCTGATGTTC TATGGCGTGT CCGAGCCGAT GTCGCACTAC
AGTGCGGCGC TGGGCGGGGT CACGCTGGGC GAGGACGGTG TGCGCACCGA CTGGGCACCG
CTCGGCGGCG CCGCCGGCAA CACCGAGGAA GCGGTGCGCC TGGGCATGGC CGCGACCATC
TTCCACTGGG GCCTGCACCC CTGGGCGATC TACGCCATCG TCGCCCTGGC CCTGGCGCTG
TTCTCCTTCA ACAAGGGCCT GCCGCTGTCG ATCCGCTCGA TCTTCTACCC GATCCTCGGT
GAGCGCGTGT GGGGCTGGCC GGGCCACGTG GTGGACATCC TCGCGGTGTT CGCCACCCTG
TTCGGCCTGG TCACTTCGCT GGGCCTCGGC GCCGAGCAGG CGGCGGCCGG CATGGAATAC
CTGTTCGGCA TCAGCGCCAC CGACACCAGC AAGGTGCTGC TGATCGTGGC CATCACCCTC
ATCGCCCTGG TGTCGGTGGT CGCCGGGTTG GAGAAGGGAG TCAAGCGCCT GTCGGAAGTG
AACATGGCCC TGGCCATGGT GCTGCTGCTG TTCGTCATCA TCGCCGGGCC GACCCTGGCC
ATCTTCACCG GCTTCTTCAA GAACCTGGGC GCCTACCTGC AATACCTGCC GGCGCTGGCC
AACCCGGTGG GCCGTGAGGA TGCCAACTTC AGTCAGGGCT GGACCGCGTT CTACTGGGCC
TGGTGGATCA GCTGGTCGCC GTTCGTGGGC ATGTTCATCG CCCGCGTCAG CCGTGGCCGC
AGCGTGCGCG AGTTTCTTAT CGCCGTGCTG CTGGTGCCGT CGCTGGTCTC GGTGCTATGG
ATGACCGCCT TCGGCGGCAC CGCGATCAAC CAGCTGCTGG TGGACGGTTT CACCGGTGCG
CAGGACGCCG GTCTGGAACT GAAGCTGTTC AGCATGCTCG GTGAAATGCC GCTGACCGCC
ATCACCTCGT TCATCGGCAT CGTGCTGGTG GTGGTGTTCT TCATCACCTC GTCGGACTCC
GGCTCGCTGG TGATCGACAC CATTACCGCC GGCGGCAAAG TCAACGCGCC GGTGCCGCAG
CGGGTGTTCT GGGCCAGCAT CGAAGGCGTG ATCGCCATCG CCCTGCTGCT CGGTGGCGGT
CTGGTGGCGC TGCAGGCCAT GGCCGTGTCG ACAGGCCTGC CGTTCACCCT GGTGCTGCTG
GTGGGCTGCG TGTCCATCGT CAAGGGGCTG ATGAGCGAGC CGCGCTGA
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| Protein sequence | MGNVPSHETT PPSAAETHDG IPAPTGEANL IDTDYVIGQD NIKGQFIFSL DIHGKVFTIS
ALVAIVFVVL ALALQNQVEP LFSGLRDWLT HHMAWFFIGA ANVFVLLCLG LIVSPLGRVR
IGGKEATPDY TYVGWFSMLF AAGMGIGLMF YGVSEPMSHY SAALGGVTLG EDGVRTDWAP
LGGAAGNTEE AVRLGMAATI FHWGLHPWAI YAIVALALAL FSFNKGLPLS IRSIFYPILG
ERVWGWPGHV VDILAVFATL FGLVTSLGLG AEQAAAGMEY LFGISATDTS KVLLIVAITL
IALVSVVAGL EKGVKRLSEV NMALAMVLLL FVIIAGPTLA IFTGFFKNLG AYLQYLPALA
NPVGREDANF SQGWTAFYWA WWISWSPFVG MFIARVSRGR SVREFLIAVL LVPSLVSVLW
MTAFGGTAIN QLLVDGFTGA QDAGLELKLF SMLGEMPLTA ITSFIGIVLV VVFFITSSDS
GSLVIDTITA GGKVNAPVPQ RVFWASIEGV IAIALLLGGG LVALQAMAVS TGLPFTLVLL
VGCVSIVKGL MSEPR
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