Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4515 |
Symbol | |
ID | 5106973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4952886 |
End bp | 4953968 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640505786 |
Product | TRAP dicarboxylate transporter- DctP subunit |
Protein accession | YP_001189994 |
Protein GI | 146309529 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 50 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCTTC GTTCGCTGCT TCTACTGCCC CTGCTCACCC TCGGCCTGAT CGGCTGCAAG GACGACTCCG AGCCGGCCGA CCAGACCGCC GCGCCCGCCC AGACCTTCCA CTGGAAGATG GTCACCACCT GGCCGAAGAA CGCGCCTGGC ACCGGCACCG CGGCCGAACG CCTGGCCGAG CGCGTCAACG CCATGAGCGC CGGGCGCCTG ACCATCAAGG TCTACGCCGC CGGCGAGCTG GTACCGGCGC TGGAAGTGTT CGATGCGGTG TCGCGCGGCA CCGCCGAACT CGGCCACGGC ACGCCCTATT ACTGGAAGGG CAAGGTGCCG GCCGCGCAGT TCTTCGGTGC GGTGCCCTTC GGCCTGTCCA CCCAGGAAAT GAACGCCTGG CTGAGCAAGG GCGGCGGCCA GGCGCTGTGG GACGAAGCCT ACGCGCCGTT CGGCCTCAAG CCGCTGACCG CCGGCAACAG CACCATGCAG ATGGGCGGCT GGTTCAACAG GGAGATCAAC AGCCTGGCCG ACATCAAGGG CCTGAAGATC CGCATGCCGG GCCTTGGCGG CGAAGTCTGG AACCGCCTCG GCGCAACCAC CGTGGTGATG CCCGGGGGCG AAATCTTCAC CGCGCTGCAG ACCGGCGCCA TCGATGCCAC CGACTGGGTC AGCCCCTACA ACGACCTGGC CTTCGGCCTG CAGAAGGCGG CCAAGTACTA CTACTATCCG GGCTGGCAGG AGCCGCAGTC GGTGCTCGAA CTGCTGATCA ACCAGAAGGC CTTCGATGCG CTGCCGGCCG ACCTGCAGGC TATCGTCACC GAAGCGGCAC GTGCGGCGAC CCAGGACATG ATGGACGACT ACGTGTTCCA CAATGCCCTG GCACTGGACG AGCTGAAGAA GAGCGGCACG CTGCTCAAGC GCTTCCCCGA CGAGGTGCTG CAGGCCATGC AGCGCGAGAC CGAACAGGTG CTCGGCGAGC TGGCGGCGCA AAGCGAGCTC AACGGGCGTA TCTGGGCCTC GATGCAGGCC TTCCAGGCGC TGGCCACCTC GATGCATGCG CTGTCGGAAA AGGAACTGTA CGACTGGCGC TGA
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Protein sequence | MRLRSLLLLP LLTLGLIGCK DDSEPADQTA APAQTFHWKM VTTWPKNAPG TGTAAERLAE RVNAMSAGRL TIKVYAAGEL VPALEVFDAV SRGTAELGHG TPYYWKGKVP AAQFFGAVPF GLSTQEMNAW LSKGGGQALW DEAYAPFGLK PLTAGNSTMQ MGGWFNREIN SLADIKGLKI RMPGLGGEVW NRLGATTVVM PGGEIFTALQ TGAIDATDWV SPYNDLAFGL QKAAKYYYYP GWQEPQSVLE LLINQKAFDA LPADLQAIVT EAARAATQDM MDDYVFHNAL ALDELKKSGT LLKRFPDEVL QAMQRETEQV LGELAAQSEL NGRIWASMQA FQALATSMHA LSEKELYDWR
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