Gene Pmen_4515 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4515 
Symbol 
ID5106973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4952886 
End bp4953968 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content67% 
IMG OID640505786 
ProductTRAP dicarboxylate transporter- DctP subunit 
Protein accessionYP_001189994 
Protein GI146309529 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones50 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCTTC GTTCGCTGCT TCTACTGCCC CTGCTCACCC TCGGCCTGAT CGGCTGCAAG 
GACGACTCCG AGCCGGCCGA CCAGACCGCC GCGCCCGCCC AGACCTTCCA CTGGAAGATG
GTCACCACCT GGCCGAAGAA CGCGCCTGGC ACCGGCACCG CGGCCGAACG CCTGGCCGAG
CGCGTCAACG CCATGAGCGC CGGGCGCCTG ACCATCAAGG TCTACGCCGC CGGCGAGCTG
GTACCGGCGC TGGAAGTGTT CGATGCGGTG TCGCGCGGCA CCGCCGAACT CGGCCACGGC
ACGCCCTATT ACTGGAAGGG CAAGGTGCCG GCCGCGCAGT TCTTCGGTGC GGTGCCCTTC
GGCCTGTCCA CCCAGGAAAT GAACGCCTGG CTGAGCAAGG GCGGCGGCCA GGCGCTGTGG
GACGAAGCCT ACGCGCCGTT CGGCCTCAAG CCGCTGACCG CCGGCAACAG CACCATGCAG
ATGGGCGGCT GGTTCAACAG GGAGATCAAC AGCCTGGCCG ACATCAAGGG CCTGAAGATC
CGCATGCCGG GCCTTGGCGG CGAAGTCTGG AACCGCCTCG GCGCAACCAC CGTGGTGATG
CCCGGGGGCG AAATCTTCAC CGCGCTGCAG ACCGGCGCCA TCGATGCCAC CGACTGGGTC
AGCCCCTACA ACGACCTGGC CTTCGGCCTG CAGAAGGCGG CCAAGTACTA CTACTATCCG
GGCTGGCAGG AGCCGCAGTC GGTGCTCGAA CTGCTGATCA ACCAGAAGGC CTTCGATGCG
CTGCCGGCCG ACCTGCAGGC TATCGTCACC GAAGCGGCAC GTGCGGCGAC CCAGGACATG
ATGGACGACT ACGTGTTCCA CAATGCCCTG GCACTGGACG AGCTGAAGAA GAGCGGCACG
CTGCTCAAGC GCTTCCCCGA CGAGGTGCTG CAGGCCATGC AGCGCGAGAC CGAACAGGTG
CTCGGCGAGC TGGCGGCGCA AAGCGAGCTC AACGGGCGTA TCTGGGCCTC GATGCAGGCC
TTCCAGGCGC TGGCCACCTC GATGCATGCG CTGTCGGAAA AGGAACTGTA CGACTGGCGC
TGA
 
Protein sequence
MRLRSLLLLP LLTLGLIGCK DDSEPADQTA APAQTFHWKM VTTWPKNAPG TGTAAERLAE 
RVNAMSAGRL TIKVYAAGEL VPALEVFDAV SRGTAELGHG TPYYWKGKVP AAQFFGAVPF
GLSTQEMNAW LSKGGGQALW DEAYAPFGLK PLTAGNSTMQ MGGWFNREIN SLADIKGLKI
RMPGLGGEVW NRLGATTVVM PGGEIFTALQ TGAIDATDWV SPYNDLAFGL QKAAKYYYYP
GWQEPQSVLE LLINQKAFDA LPADLQAIVT EAARAATQDM MDDYVFHNAL ALDELKKSGT
LLKRFPDEVL QAMQRETEQV LGELAAQSEL NGRIWASMQA FQALATSMHA LSEKELYDWR