| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4510 |
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| Symbol | |
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| ID | 5106968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4942902 |
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| End bp | 4945505 |
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| Gene Length | 2604 bp |
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| Protein Length | 867 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505781 |
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| Product | TonB-dependent hemoglobin/transferrin/lactoferrin family receptor |
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| Protein accession | YP_001189989 |
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| Protein GI | 146309524 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.531112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCTTC ACACCAGGCG CCCGCATTTC CCGCGACTGT CCACCGCCAG CCTGTCGCTG
CTGGCACTCT CCATCGCCTG CGCCGGCCTG CCGCTGGCCC ATGCCGCCGA GCCGACGCCG
GCGACGCAGC AGCACAACCA GGGCGGTTAC CACTTCGCCA TCGAGCGCCA GCCACTGGTC
TCGGCGCTGA ACAGCTTCAG CGACATCACC GGCTGGCAGG TGGGCCTGCC GGCGCAACTG
GCCGATGGCG TCTATTCTCC CGGCACCAGC GGGCGCCTTT CCGCAGAGCT GGCCCTGGCG
CGTCTGCTCG AAGGCACCGG CCTGAGCTAC CGCAGCGTCG GCGAGCGCAG CGTGATTCTG
GTACGCAACC CCAGCCAGTC CATCGCCCTG CAGCCGATGA CGGTCACCGC CACGCGCCGC
GAACAGAGCG TCAGCGAGGT GCCCAGCTCG GTCAGCGTGC TCGGCCGCGA GCAGCTCGAC
CGGCAGAACG TGGAGGACAT CCAGGACCTG GTGCGCTACG AACCCGGCGT CTCCGTCGGC
GGCACCGGCC AGCGCGCCGG CCTCACCGGC TACAACATCC GCGGCATCGA CGGTAACCGC
GTGCTGACGC AGATCGACGG CGTGGAAATA CCGGCCAGCT TCTTCTACGG CCCCTACGCC
CAGACCCATC GCAACTATGT CGACCCGGAA ATCGTCAAGC GCGTGGAAAT CCTCCGCGGC
CCGGCCTCGG CCCTGTATGG CAGCAGCGCC ATCGGTGGTG CGGTGAGCTA CTTCACCCTG
GATGCCGACG ACATCATCAA GAACGGCCGG GAGGTCGGCG CGCGCCTGAA GACCGGCTAC
AGCTCGGCCG ACGACAGCTG GCTCAAGTCG GCGACGCTGG CCGGCCGTCA CGAACAGTTC
GACGCCCTGC TGCACCTGTC CCGGCGCGAC GGCCATGAGA CCGAATCCTA CGGCGACACC
GGCGGCAGCG GCCTGAATCG CACCCGGGCC AACCCCGAGG ACGTGCGCAC CACCAACCTG
CTGGCCAAGC TGGGCTGGAA CTACAACGAC AGCGACCGCC TGCAACTGAC CTACGAGAAA
TACAAGGACG ACCGCGACAG CAACCAGCTG AGCGCCGTCG GCGGGCCGTT CAATGCCGGC
AGCGGCTTCG GCTACTACCG CTCGCGCAAC GCCAACGACA CCATCACCCG CGAGCGTTTC
GGCCTGGAAC ATCGCCTGGC GCTGCACAGC CCGGTGGCCG ACACGCTGAA ATGGAGCCTG
AACTACCAGT TGGCCAAGAC CGACCAGAGC ACGGTGGAAA ACTACGTTCC CACCAACTTC
TTCACCGGCG CGGTGACCCG CGACGTCATG CGCTATCGGG ACACCTACTA CAAGGATCGT
CAGTGGCTGT TCGATGCGCA GCTGGACAAG GCCTTCGCCC TGGGCGCCAC CGACCACCTG
CTGACCTATG GTCTGACCCT CAAGCATCAG GAGGTGCGCG GCCTGCGCAC CGGCTACGGC
ATCTGCAACG CCGCCATCGG CGCCGCCTGC AGCGGCGGCG TCGGCTCGCC GAGCAGCAAC
GCCAGCGACA ACCTGACGCC GCAGAGCGAT TTCCCCGACC CAACCGTCAA GACCTATGCC
CTGTTCCTGC AGGACGACAT TCGCTGGGAC CAGTGGACCT TCCTGCCGGG CCTGCGCTAT
GACCGCACCC ACCTCGATCC GACGATCACC GAGCGCTACC AGGCCACCGC CATCGGCGGC
GGCAGCGAAC CCAGCGGCGC AAGCCGAACC TGGCAGCGCG TCTCGCCCAA GCTCGGCGTC
ACCTATGCCT TCGATGATCA CTACACCTGG TTCGGCCAGT ACGCCGAGGG CTTCCGCACG
CCGACGGCCA AGGAAATGTA CGGGCGTTTC CAGAACTCCA ACCCGTCCTA CATCGTCGAG
CCCAACCCGG ATCTCGACCC GGAGAAGAGC CGCGGCCTGG AGACCGGCCT GCGCGGCAAC
TTCGCCAGTG GCAGCTTCGA CCTGGCGCTG TTCTACAACC GCTACCGCGA CTTCCTCGAC
GAAGACGCCG CTGGCAGCCG CGGCGCCATC CCCGTGTTCC AGAGCCGGAA CGTCAGCCGT
GCCAGCATCC GCGGCGTCGA ACTGAAAGGC CGTCTCGATC TGGACAGCTT CGGCGCCATG
GACGGCCTGT ACACCCAAGG CTCCATCGCC TACGCCCGCG GTCGCAACGA GGAAACCGGC
GAAGCGCTCA ACAGCATCAA CCCGCTGACC GGCGTGTTCG GCCTGGGCTA CGAGCAGGAG
CGGTTCGGCG CCCTGCTGAG CTGGACCCTG GTCAAGCGCA AGACGCGCAT CGACGACAGC
AGCTTCAACA GCCCCGACGG CAGCGGCAGC CAGTTCGCCA GCCCCGGCTA CGGCATCCTC
GATCTGACCG GCCATTACCG ACTGAGCGAC GACCTGACCG TCAACGCCGG CCTGTACAAC
CTGACCGACA AGAAATACTG GTTGTGGGAT GACGTGCGCG GCTACGACGA CGTTGGCGAA
GCAGGCGTGA CCAGCCCAGC CAACCTCGAC CGCCTGACCC AGCCGGGGCG CAACGTCTCG
ATCAACCTGG TCTGGGACAT CTGA
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| Protein sequence | MPLHTRRPHF PRLSTASLSL LALSIACAGL PLAHAAEPTP ATQQHNQGGY HFAIERQPLV
SALNSFSDIT GWQVGLPAQL ADGVYSPGTS GRLSAELALA RLLEGTGLSY RSVGERSVIL
VRNPSQSIAL QPMTVTATRR EQSVSEVPSS VSVLGREQLD RQNVEDIQDL VRYEPGVSVG
GTGQRAGLTG YNIRGIDGNR VLTQIDGVEI PASFFYGPYA QTHRNYVDPE IVKRVEILRG
PASALYGSSA IGGAVSYFTL DADDIIKNGR EVGARLKTGY SSADDSWLKS ATLAGRHEQF
DALLHLSRRD GHETESYGDT GGSGLNRTRA NPEDVRTTNL LAKLGWNYND SDRLQLTYEK
YKDDRDSNQL SAVGGPFNAG SGFGYYRSRN ANDTITRERF GLEHRLALHS PVADTLKWSL
NYQLAKTDQS TVENYVPTNF FTGAVTRDVM RYRDTYYKDR QWLFDAQLDK AFALGATDHL
LTYGLTLKHQ EVRGLRTGYG ICNAAIGAAC SGGVGSPSSN ASDNLTPQSD FPDPTVKTYA
LFLQDDIRWD QWTFLPGLRY DRTHLDPTIT ERYQATAIGG GSEPSGASRT WQRVSPKLGV
TYAFDDHYTW FGQYAEGFRT PTAKEMYGRF QNSNPSYIVE PNPDLDPEKS RGLETGLRGN
FASGSFDLAL FYNRYRDFLD EDAAGSRGAI PVFQSRNVSR ASIRGVELKG RLDLDSFGAM
DGLYTQGSIA YARGRNEETG EALNSINPLT GVFGLGYEQE RFGALLSWTL VKRKTRIDDS
SFNSPDGSGS QFASPGYGIL DLTGHYRLSD DLTVNAGLYN LTDKKYWLWD DVRGYDDVGE
AGVTSPANLD RLTQPGRNVS INLVWDI
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