Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4390 |
Symbol | |
ID | 5107243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4812623 |
End bp | 4814731 |
Gene Length | 2109 bp |
Protein Length | 702 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640505656 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_001189869 |
Protein GI | 146309404 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.0406884 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCGGCA TAGACGCTCT CGCCGATCGG CTTTCGACCT ATCTCGGCCA TGACCAGGTC AACCTGGTCC GCCGCGCCTA CTTCTACGCC GAACAGGCGC ACGATGGCCA ACGCCGCCGC AGCGGCGAGG CCTACGTGAC CCATCCGCTG GCCGTGGCCA GCATCCTCGC CGATATGCAC ATGGATCATC AGAGCCTGAT GGCCGCCATG CTGCACGACG TCATCGAAGA CACCGGCATC GCCAAGGAAG CGCTCAACGC GCAGTTCGGC GAAACCGTGG CCGAACTGGT CGACGGGGTC AGCAAGCTGA CCCAGATGAA CTTCGAGACC AAGGCCGAGG CACAGGCCGA GAACTTCCAG AAGATGGCCA TGGCCATGGC CCGCGACATC CGCGTGATTC TGGTCAAACT CGCCGACCGC CTGCACAACA TGCGCACCCT CGATGCCATG CCGCACGAGA AGAGCCGGCG CATCGCCAAG GAAACCCTGG AAATCTACGC GCCCATCGCC AACCGCCTGG GCATGCACAA CATGCGCGTG GAATTCGAGG ACCTGGGCTT CAAGGCCATG CACCCGATGC GCTCCGAGCG CATCCGCGCC GCCGTGCGCC GCGCTCGGGG CAACCGCAAG GAAATCGTGG CCAAGATCGA GGAATCGATC CAGATGTGCC TGCAGCGCGA GGGCATGGAA GGCGAAGTGA TCGGCCGCGA GAAACACCTC TACAGCATCT ACCAGAAGAT GCGCGGCAAG CGTAAGGCGT TCAACGAGAT CATGGACGTC TACGCCTTCC GCATCATCGT CGACAAGGTC GACACCTGCT ACCGCGTGCT CGGCGCCGTG CACAACCTGT ACAAACCACT GCCGGGTCGC TTCAAGGACT ACATCGCGAT TCCCAAGGCC AACGGCTACC AGTCGCTGCA CACCACGCTG TTCGGCATGC ACGGCGTGCC CATCGAGATC CAGATCCGTA CCCGCGAGAT GGAAGAGATG GCCAACAACG GCATCGCCGC GCACTGGCTG TACAAGTCCA ACGAGGACGA AGTGCCCAAG GGCAACCATG CCCGTGCACG CCAGTGGGTC AAGGGTGTGC TGGAACTGCA GCAGCGCGCC GGCAATTCGC TGGAATTCAT CGAAAGCGTG AAGATCGACC TGTTCCCGGA CGAGGTCTAC GTGTTCACGC CCAAGGGCCG CATCATGGAG CTGCCGAAAG GCTCCACCGC GGTCGACTTC GCCTACGCGG TGCATACCGA CGTCGGCAAT ACCTGCATCG CCTGCCGCAT CAACCGCCGT CTGGCACCGC TGTCGCAGGC GCTGGAAAGC GGCTCGACGG TGGAAATCGT CACCGCGCCG GGCGCCCGAC CGAATCCGGC CTGGCTCAAC TTCGTGGTCA CCGGCAAGGC GCGCACACAC ATCCGCCATG CCCTCAAGCA GCAGCGCCGT TCCGAATCCA TCAGCCTCGG CGAACGCCTG CTGAACAAGG TCCTGGCCAG CTTCGACACG CACCTGGAGA AGATTGCCCC CGAGCGCGTA CAGGCGGTGC TCGGTGAATA CCGCCAGGAA GTGATCGAGG ATCTGCTGGA GGACATCGGC CTGGGCAACC GCATGGCCTA CGTGGTCGCC CGTCGCCTGC TGGCCGAAAG TGGCGAGGCC CTGCCGAGCA GCGAAGGCCC GCTGGCCATT CGCGGCACCG AAGGCCTGGT ACTGAGCTAC GCCAAGTGCT GCACGCCGAT TCCGGGCGAC CCCATCGTCG GCCACCTGTC GGCCGGCAAG GGCATGGTGG TGCACCTGGA AAGCTGCCGC AACATCAGCG AAATCCGCCA CAACCCGGAA AAATGCATCC AGCTCAACTG GGCCAAGGAT GTCGCCGGCG AATTCAACGT CGAACTGCGC GTCGAGCTGG AGCACCAGCG CGGCCTGATC GCCCTGCTGG CCAGCAGCGT CAACGCCGCC GATGGCAACA TCGAGAAGAT CGGCATGGAC GAGCGCGACG GCCGGATCAG CGTGGTACAG CTGGTGATCA GCGTGCATGA CCGCGTCCAC CTGGCCCGCG TGATCAAGAA ACTGCGCGCG ATCAAGGGCG TGATGCGTAT CACCCGAGTA CGCGCCTGA
|
Protein sequence | MAGIDALADR LSTYLGHDQV NLVRRAYFYA EQAHDGQRRR SGEAYVTHPL AVASILADMH MDHQSLMAAM LHDVIEDTGI AKEALNAQFG ETVAELVDGV SKLTQMNFET KAEAQAENFQ KMAMAMARDI RVILVKLADR LHNMRTLDAM PHEKSRRIAK ETLEIYAPIA NRLGMHNMRV EFEDLGFKAM HPMRSERIRA AVRRARGNRK EIVAKIEESI QMCLQREGME GEVIGREKHL YSIYQKMRGK RKAFNEIMDV YAFRIIVDKV DTCYRVLGAV HNLYKPLPGR FKDYIAIPKA NGYQSLHTTL FGMHGVPIEI QIRTREMEEM ANNGIAAHWL YKSNEDEVPK GNHARARQWV KGVLELQQRA GNSLEFIESV KIDLFPDEVY VFTPKGRIME LPKGSTAVDF AYAVHTDVGN TCIACRINRR LAPLSQALES GSTVEIVTAP GARPNPAWLN FVVTGKARTH IRHALKQQRR SESISLGERL LNKVLASFDT HLEKIAPERV QAVLGEYRQE VIEDLLEDIG LGNRMAYVVA RRLLAESGEA LPSSEGPLAI RGTEGLVLSY AKCCTPIPGD PIVGHLSAGK GMVVHLESCR NISEIRHNPE KCIQLNWAKD VAGEFNVELR VELEHQRGLI ALLASSVNAA DGNIEKIGMD ERDGRISVVQ LVISVHDRVH LARVIKKLRA IKGVMRITRV RA
|
| |