| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4362 |
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| Symbol | |
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| ID | 5107215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4780878 |
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| End bp | 4782608 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505628 |
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| Product | PHB depolymerase family esterase |
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| Protein accession | YP_001189841 |
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| Protein GI | 146309376 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3509] Poly(3-hydroxybutyrate) depolymerase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01840] esterase, PHB depolymerase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC AATCCTTGCC CCAAGGCATG GCGGATCAGC GTCTTTGCCG CTTTTTCACT
GCTGCCCTGT GTTCCCTGCT GATGATCCTG CTGTGGCCGA CCACGGTCAC GGCGGGGCAA
ACCTTCTCCT ACACCTCCCC GCAACAGGCC TACAGCGGCT CGCGCGAGCG CAGCTACAAG
GTGTATGTCC CTGCCGGCCT GAGCACGCCT GCACCCATGG TGATGGCGCT GCATGGCTGC
CGGCAGACCA ACGACGACGT GCTCAACGAC TGGGGCCTCA AGGCGGCGGC GGATCGCTAC
GGCTTCATTC TGGTGGCGCC CTTCATCACC AGCTACGACG GGCTGCGCAA CGAGAACTGC
TGGGGCTTCT GGTTCGAGCA GCACATCCAC CAGGGTGGCG GGGAGGTCGC GGACCTGCAC
CGCATCGCCC AGCAGGTGGA AGCCAACTTC GTCATCGACG CCAACCGGCG CTTCATCACC
GGCCTGTCGT CCGGCGGCGC CATGGCCCTG GTCGCTGCCG TGGCCTACAA CGAGTACTGG
GCGGCGGCAG CGCCGGCGGC AGGCCTGCCG TACCGGGAAA CGGCGTCTTC GGTCTCGCTG
TCCGGGCAAT GCCCGGGCTC GGCCACCTTC CGTAGCGTCA GCCAGGTCGC GGCCGACATG
CGCAGCGAAG TCAACGACGC CTACCCGATT CCCCTGATGA TTCTGCAGAA CAGGAACGAC
TGCACCGTGC TGCAGACCGC GGCCAACAAC ATGCGCGACG CCCACCTGCA GGTGTTCGGC
AGTGCCAGCC GCAACACCCC GGCGACCACC AAGGCGTCCG ATACCGGTTG CTCGCCCTAC
CATCAGAACG ACTACGGCTG CCGTCATATC GCCTACACCC AGGACGGCAC CACGGCGACT
CGCTCGCTGG TGGAAACCGT CATCTACGAC GGCCCCCTGG CCACGCCCAA CCCCCAGGAC
ACCAACCACG GCCACTACTG GATTGGCGGT GCCCAGGGCA ACAACGGCAA ATGGTCGCTT
CAGGTCGGCC CCAGCTATCC CGACATCATC TGGGACTTCT TCAGCCGCCA CAGCCGTGAC
GGCAGCCAGC CGCAGGGGCA TCCGGTGATC GTTCTGCAGG GCGACAACCC GCTGTCGGTG
CCGCTGGGCA GCACCTTCAA TGATCCCGGC GCCAGCGCCA GCGACGCGGA AGACGGCAGC
CTGCCGGTCA GCGCCGACTG CAGCGCGGTG AACCCGAGCG TCGTCGGCAG CTACAGCTGC
CTCTATTCGG CCACCGACAG CGACGGCAAC CGCAGCACGC TCACCCGTAC CGTGGAGGTC
TACGATCCCA ACGCCCCGGT GGAAACCTGC CAGGTCGTCA GCGCCTCGCC CTCCGCCCAC
ATCGGCGCCG GTCGCGCCTA CGCCGGCGGC ACCTCCAACC TGCGCGCCTA CGCCAAGGAC
GACGGCGTGG ACATCGGTGG CTCGTTCGAC ACCTGGAGCA ACGTTCCGCT GTACGAGGGC
GAGCCGGGAC GCTGGTACGC GCAGCGGCCC GCCGCCTGTG GCGGCAGCGG CCAGGCCTTC
ACCTGCCAGG AGTGGAACGC CAGCAACCTC AGCCACGTGA TGGCCGGCCG TGCCTATTAC
GGTTACTACA CCGTCGGCGG CAACCAGTAC CTGGGCAGCC TGTCCGGGCT CAGCACCTGG
GTGCGGGAAA CGGCTCAGGG CCATTTCCAG GCCGGACGCT GCAGCAACTG A
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| Protein sequence | MTKQSLPQGM ADQRLCRFFT AALCSLLMIL LWPTTVTAGQ TFSYTSPQQA YSGSRERSYK
VYVPAGLSTP APMVMALHGC RQTNDDVLND WGLKAAADRY GFILVAPFIT SYDGLRNENC
WGFWFEQHIH QGGGEVADLH RIAQQVEANF VIDANRRFIT GLSSGGAMAL VAAVAYNEYW
AAAAPAAGLP YRETASSVSL SGQCPGSATF RSVSQVAADM RSEVNDAYPI PLMILQNRND
CTVLQTAANN MRDAHLQVFG SASRNTPATT KASDTGCSPY HQNDYGCRHI AYTQDGTTAT
RSLVETVIYD GPLATPNPQD TNHGHYWIGG AQGNNGKWSL QVGPSYPDII WDFFSRHSRD
GSQPQGHPVI VLQGDNPLSV PLGSTFNDPG ASASDAEDGS LPVSADCSAV NPSVVGSYSC
LYSATDSDGN RSTLTRTVEV YDPNAPVETC QVVSASPSAH IGAGRAYAGG TSNLRAYAKD
DGVDIGGSFD TWSNVPLYEG EPGRWYAQRP AACGGSGQAF TCQEWNASNL SHVMAGRAYY
GYYTVGGNQY LGSLSGLSTW VRETAQGHFQ AGRCSN
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