Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4362 |
Symbol | |
ID | 5107215 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4780878 |
End bp | 4782608 |
Gene Length | 1731 bp |
Protein Length | 576 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640505628 |
Product | PHB depolymerase family esterase |
Protein accession | YP_001189841 |
Protein GI | 146309376 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3509] Poly(3-hydroxybutyrate) depolymerase |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence [TIGR01840] esterase, PHB depolymerase family |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAGC AATCCTTGCC CCAAGGCATG GCGGATCAGC GTCTTTGCCG CTTTTTCACT GCTGCCCTGT GTTCCCTGCT GATGATCCTG CTGTGGCCGA CCACGGTCAC GGCGGGGCAA ACCTTCTCCT ACACCTCCCC GCAACAGGCC TACAGCGGCT CGCGCGAGCG CAGCTACAAG GTGTATGTCC CTGCCGGCCT GAGCACGCCT GCACCCATGG TGATGGCGCT GCATGGCTGC CGGCAGACCA ACGACGACGT GCTCAACGAC TGGGGCCTCA AGGCGGCGGC GGATCGCTAC GGCTTCATTC TGGTGGCGCC CTTCATCACC AGCTACGACG GGCTGCGCAA CGAGAACTGC TGGGGCTTCT GGTTCGAGCA GCACATCCAC CAGGGTGGCG GGGAGGTCGC GGACCTGCAC CGCATCGCCC AGCAGGTGGA AGCCAACTTC GTCATCGACG CCAACCGGCG CTTCATCACC GGCCTGTCGT CCGGCGGCGC CATGGCCCTG GTCGCTGCCG TGGCCTACAA CGAGTACTGG GCGGCGGCAG CGCCGGCGGC AGGCCTGCCG TACCGGGAAA CGGCGTCTTC GGTCTCGCTG TCCGGGCAAT GCCCGGGCTC GGCCACCTTC CGTAGCGTCA GCCAGGTCGC GGCCGACATG CGCAGCGAAG TCAACGACGC CTACCCGATT CCCCTGATGA TTCTGCAGAA CAGGAACGAC TGCACCGTGC TGCAGACCGC GGCCAACAAC ATGCGCGACG CCCACCTGCA GGTGTTCGGC AGTGCCAGCC GCAACACCCC GGCGACCACC AAGGCGTCCG ATACCGGTTG CTCGCCCTAC CATCAGAACG ACTACGGCTG CCGTCATATC GCCTACACCC AGGACGGCAC CACGGCGACT CGCTCGCTGG TGGAAACCGT CATCTACGAC GGCCCCCTGG CCACGCCCAA CCCCCAGGAC ACCAACCACG GCCACTACTG GATTGGCGGT GCCCAGGGCA ACAACGGCAA ATGGTCGCTT CAGGTCGGCC CCAGCTATCC CGACATCATC TGGGACTTCT TCAGCCGCCA CAGCCGTGAC GGCAGCCAGC CGCAGGGGCA TCCGGTGATC GTTCTGCAGG GCGACAACCC GCTGTCGGTG CCGCTGGGCA GCACCTTCAA TGATCCCGGC GCCAGCGCCA GCGACGCGGA AGACGGCAGC CTGCCGGTCA GCGCCGACTG CAGCGCGGTG AACCCGAGCG TCGTCGGCAG CTACAGCTGC CTCTATTCGG CCACCGACAG CGACGGCAAC CGCAGCACGC TCACCCGTAC CGTGGAGGTC TACGATCCCA ACGCCCCGGT GGAAACCTGC CAGGTCGTCA GCGCCTCGCC CTCCGCCCAC ATCGGCGCCG GTCGCGCCTA CGCCGGCGGC ACCTCCAACC TGCGCGCCTA CGCCAAGGAC GACGGCGTGG ACATCGGTGG CTCGTTCGAC ACCTGGAGCA ACGTTCCGCT GTACGAGGGC GAGCCGGGAC GCTGGTACGC GCAGCGGCCC GCCGCCTGTG GCGGCAGCGG CCAGGCCTTC ACCTGCCAGG AGTGGAACGC CAGCAACCTC AGCCACGTGA TGGCCGGCCG TGCCTATTAC GGTTACTACA CCGTCGGCGG CAACCAGTAC CTGGGCAGCC TGTCCGGGCT CAGCACCTGG GTGCGGGAAA CGGCTCAGGG CCATTTCCAG GCCGGACGCT GCAGCAACTG A
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Protein sequence | MTKQSLPQGM ADQRLCRFFT AALCSLLMIL LWPTTVTAGQ TFSYTSPQQA YSGSRERSYK VYVPAGLSTP APMVMALHGC RQTNDDVLND WGLKAAADRY GFILVAPFIT SYDGLRNENC WGFWFEQHIH QGGGEVADLH RIAQQVEANF VIDANRRFIT GLSSGGAMAL VAAVAYNEYW AAAAPAAGLP YRETASSVSL SGQCPGSATF RSVSQVAADM RSEVNDAYPI PLMILQNRND CTVLQTAANN MRDAHLQVFG SASRNTPATT KASDTGCSPY HQNDYGCRHI AYTQDGTTAT RSLVETVIYD GPLATPNPQD TNHGHYWIGG AQGNNGKWSL QVGPSYPDII WDFFSRHSRD GSQPQGHPVI VLQGDNPLSV PLGSTFNDPG ASASDAEDGS LPVSADCSAV NPSVVGSYSC LYSATDSDGN RSTLTRTVEV YDPNAPVETC QVVSASPSAH IGAGRAYAGG TSNLRAYAKD DGVDIGGSFD TWSNVPLYEG EPGRWYAQRP AACGGSGQAF TCQEWNASNL SHVMAGRAYY GYYTVGGNQY LGSLSGLSTW VRETAQGHFQ AGRCSN
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