| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4258 |
|---|
| Symbol | |
|---|
| ID | 5107032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4661102 |
|---|
| End bp | 4663327 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640505522 |
|---|
| Product | AsmA family protein |
|---|
| Protein accession | YP_001189737 |
|---|
| Protein GI | 146309272 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0000000475178 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGC TCGGCAAGAT CCTGGGCCTC TTCCTTCTCG GCTTGCTGCT GATCGTAGTG
GCGCTGCTGT TCGCTCTGAC TCATCTGTTC GACCCCAACG ACTACAAGGA CGAGATCCGC
CAGATCGCCC GCGACAAGGC CAACCTCGAG CTGCAGCTCA GGGGCGATAT CGGCTGGAGC
CTGTTCCCCT GGCTGGGCCT GGAACTGACC GACGCCACCC TGGCCAGTGC CGACACCCCG
GACAAGCCCT TCGCCGACCT GCGCATGATC GGCCTGTCGG TGCGCGTGAT GCCGCTGCTG
CGCAAGGAAG TGCAGATGAG CGACATCCGC GTCGACGGCC TCAACCTCAA CCTGCAGCGC
GACGACAAGG GCCGCGGCAA CTGGGAAGGC GTCGGCCGCC CGGCCCAGGC CAGCGCCACG
CAACCCGCGC CCAGCGAACC CGCACCGAGT AAAGATGCGC CGCCGAGCCA GCCGAGCGAA
AAGCCGGCCG GCCAGCCGGT CAAGCTGGAT ATCGACAGCC TGACCCTGAG CAACTCGCGC
ATCGACTACA GCGACGCGCA GAAGGGCCAG CAATTCACCC TGGAGAACAT CGAGCTGAAA
ACCGGCGCCA TCCGCGAAGG CGCCAGCATT CCGGTCAAGT TCAGCGCCTT CTTCGGCACC
AACCAACCGG TGCTGCGCGC GCGCAGCGAG GTCGAAGGCC AGTTGCGCTT CGACCGCGTG
CTCAAGCGCT ACCAGTTCGA AGACCTCAAG CTGGCCGGCG AAGCCTCCGG TGAGCCGCTC
AAGGGCAAGA CCCTGAACTT CTCTGCCCAG GGCCAGCTGC TGGTCGACCT GGCCGCGAAT
ATCGCCGAAT GGAACGGCCT CAAGCTTTCC GCCAACCAGC TGCGCGCGCT CGGCGAGATC
AAGGCGCGCG AACTGGACAA GGACGCCAAA CTTTCCGGCG GCCTGTCCAT CGCCCCGCTC
AACCTGCGCG AATTCCTCGA AGGCGTCGGC GTCGAACTGC CGCCCATGCA GGCCGCCAAC
AGCCTCAGCC AGTTCGAACT GGCCAGCCGC CTGAACGGCT CGAGCAAGGG CATGATGCTC
GAGGAGCTCA ACCTCAAGCT CGACGGCAGC ACCTTCACCG GCAAGCTGGG CGTGACCGAC
TTCGCCAGGC AGGCGCTGCG CGCCGACCTC AAGGGCGACA AGCTCGACCT GAACCGCTAT
CTGCCGCCGA AAGCCCAGGA CAGTGCCGGT GCCGCACGCA AGGCCGAGGT CAAGGAAAGC
ATCGCCGGTG CCGGCAAGGA CGGCACCACC CCGCTGCCCA ATGCCCCGAC CCAGCAGGCC
TGGAGCAGCG AGAAAGTGCT GCCGGTGGAT CAGCTGCGCA AGCTCGATCT GCAACTGGCA
CTGAACCTGG GCCAGCTCAG CTATGAAAAG CACCAGTTCA GCGACGTCAA CCTCAAGGCC
AACGGCCGTG GCGGCCTGAT CACGGTGGAA GAGCTGCGCG GCAAGCTGCA GGGCGGCAGC
TTCGTCAGCA GCGGGCGCAT CGATGTGCGT CAGGCCGAGC CGATGCTGAG CCTGGAACAG
CGCTTCAGCG GCATGCCGCT GGAGCCGCTG CTGAAGAAGG ACGACCAACC CTCGCCGATC
AAGGGCCAGC TCGATCTGGA TGCCAAGTTC AACACCCGCG GCAACAGCCA GAAAGCCTGG
GTCGAGGCGC TCAACGGCAA CGCCAGCTTC GTCCTCAACG ACGGCGTGCT GGTCGACGCC
AACCTAGAGC AGCAACTGTG CCGCGGCATC GCCACGCTCA ACCGCAAGGC GCTGAGCAAC
CCGCCAACCG GCAAGGACAC CCCCTTCCGC GAGCTCAAGG GCAGCCTCAG CGTGCGCGAC
GGCGTCGCCC ACAACCCGGA CCTCAAGGCC CAGGTGCCGG GCCTGGCGGT CAGCGGCAAT
GGCGATCTCG ACCTGCGCGT GCTCGGCCTC GACTACAAGG TCGGCATCAC CCTGCAGGGC
GACCAGCGCG AGATGCCGGA CCCGGCCTGC CAGGTCAACG AGCGCTACGT CGGCATCGAA
TGGCCGCTGC GCTGCCGCGG CCCGCTGGAG CTGGGCGCCA AGGCCTGCCG TCTGGATCAG
GACGGGCTCG GCAAGATCGC CGCGCGCCTG GCCGGCAACA AGCTGACCGA GAAGCTGGAA
GAGAAGCTCG GCGACAAGGT CAGCCCGGAT CTGAAAGACG CACTCAAGGG CCTGTTCAAC
CGATGA
|
|---|
| Protein sequence | MKALGKILGL FLLGLLLIVV ALLFALTHLF DPNDYKDEIR QIARDKANLE LQLRGDIGWS
LFPWLGLELT DATLASADTP DKPFADLRMI GLSVRVMPLL RKEVQMSDIR VDGLNLNLQR
DDKGRGNWEG VGRPAQASAT QPAPSEPAPS KDAPPSQPSE KPAGQPVKLD IDSLTLSNSR
IDYSDAQKGQ QFTLENIELK TGAIREGASI PVKFSAFFGT NQPVLRARSE VEGQLRFDRV
LKRYQFEDLK LAGEASGEPL KGKTLNFSAQ GQLLVDLAAN IAEWNGLKLS ANQLRALGEI
KARELDKDAK LSGGLSIAPL NLREFLEGVG VELPPMQAAN SLSQFELASR LNGSSKGMML
EELNLKLDGS TFTGKLGVTD FARQALRADL KGDKLDLNRY LPPKAQDSAG AARKAEVKES
IAGAGKDGTT PLPNAPTQQA WSSEKVLPVD QLRKLDLQLA LNLGQLSYEK HQFSDVNLKA
NGRGGLITVE ELRGKLQGGS FVSSGRIDVR QAEPMLSLEQ RFSGMPLEPL LKKDDQPSPI
KGQLDLDAKF NTRGNSQKAW VEALNGNASF VLNDGVLVDA NLEQQLCRGI ATLNRKALSN
PPTGKDTPFR ELKGSLSVRD GVAHNPDLKA QVPGLAVSGN GDLDLRVLGL DYKVGITLQG
DQREMPDPAC QVNERYVGIE WPLRCRGPLE LGAKACRLDQ DGLGKIAARL AGNKLTEKLE
EKLGDKVSPD LKDALKGLFN R
|
|---|
| |