| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4225 |
|---|
| Symbol | |
|---|
| ID | 5106649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4629853 |
|---|
| End bp | 4632057 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640505489 |
|---|
| Product | heavy metal translocating P-type ATPase |
|---|
| Protein accession | YP_001189704 |
|---|
| Protein GI | 146309239 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTT GCTGCGACCA TTCGCACGAA CCCGTTGCCG GGGGCGGGCA GCCCGTCGGG
CATGAGCACC ACGCTGCTCC CCAGCTGCAG TCTGACGAGG CGCTGGGCGG TGCGTTCACC
ACGCGCATCC GCATCGAGCA GATGGACTGT CCGACCGAGG AGCGGCTGCT CCGCGATGCC
CTGGGCAAGC TGCCGGGCGT CGCCGCCCTG CATTTCAATC TGCTGCAGCG CGTGCTCACC
GTCGGCCATG ACGAAGGCGC GCTGACGCGC GTGCTGTCGG CGATCCGGGC GCTGGGGTTC
ACCCCGCAGG TGGAAGGGCA GGCTGGGGCG CCTGCGCCCG CCGTAGCGCC TGCGCACAAA
CCCTGGTGGC CGCTGGCGCT GGCCGGCGTG CTGGCCACGG CCTCGGAGCT GGTGCATTTC
GCGGCTCTCG GTCCCGACTG GCTGGTGGCG CTGCTCGCCG TGATGGCCAT CGCCATCTGC
GGGCCGAGCA CCTACAGAAA AGGCTGGGTC GCCCTGAAGA ACCGCAACCT CAACATCAAT
GCGCTGATGA GCATCGCCGT GACCGGCGCG GTGCTGACCG GCCAGTGGCC GGAAGCGGCG
ATGGTGATGG TGCTTTTCAC CCTGGCCGAG CTGATCGAGG CGCGTTCGCT GCAGCGGGCG
CGCAACGCCA TTGCCAGTCT GATGGACCTG GCACCGCCGC GCGCCACGCG GCGCCAGGCC
GATGGCAGCT GGCAGGAGGT GGACGTGCAG GCGGTGGCGG TCGGCGATGT GCTGCGGGTG
CGGCCGGGCG AACGCATCGG CCTGGATGGC GAGGTGATCG CCGGTGCCTC GACGGTCAAC
CAGGCGCCGA TCACCGGTGA GAGCCTGCCG CTGGACAAGG GCGTCGGTGA CACGCTGTTC
GCCGGCACCA TCAACCAGGC GGGGTCGCTG GAATACCGGG TGACGGCGGC GGCGCGCGAC
ACCACGCTGG CGCGCATCAT CCATGCGGTG GAGGAGGCGC AGGGCTCGCG CGCGCCGACC
CAGCGCTTCG TCGATCGCTT CTCGCGCATC TATACCCCCA CGGTGTTCGC CTTCGCCCTG
GCGGTCGCCG TGCTGCCGCC GCTGTTGGCG GGCGGCGCCT GGCTCGACTG GATCTACCGC
GCGCTGGTGC TGCTGGTGGT GGCCTGCCCC TGCGCGCTGG TGATTTCCAC GCCGGTGACC
ATCGTCAGCG GCCTGGCCGC GGCGGCGCGC AAGGGCATCC TGATCAAGGG CGGCGTGTAC
CTGGAAAGCG GTCGACACCT GGCGCTGCTG GCGCTGGACA AGACCGGCAC CCTGACCCAT
GGCAAACCGG TGCAGACCGA CTGCCTGAGC CTGGGCGATG GCGATACGCA GCAGCTCGCG
CTGTGGGCTG CCAGCCTGGC GGCGCGTTCC GATCACCCGG TTTCCCAGGC GCTGGCCCGT
GCCCTGGAGG GCCAGGCGCT GGCTGAAGTG GAGGCGTTCG AGGCGTTGCC GGGGCGCGGC
ACCCGCGGCC GTATCGACGG GCGCCTGCTG CACCTGGGCA ATCACCGCCT GGTCGAGGAA
CTCGGGCTGT GCTCGCCGGC ACTGGAGCAG CGCCTGGAGG CGTTGGAGCG GCAGGGCAAG
AGTGTGGTGC TGCTGTGCGA CGAGCAGCGT GCGCTGATGC TCTTCGCCGT GGCCGACACG
CTACGCCAGA GCAGCCGCGA GGCGGTGCAG CAGTTGCACG CGCTGGGCGT GCGCACCTGC
ATGCTCAGCG GCGACAACGC CCACACCGTG GCGGCCATCG CCGAACAGGT CGGCATCGAC
GAGGCGCGCG GCGACCTGCT GCCGGCGGAC AAGCTGGCCT GGGTCGAGAC GCGTCAGGCA
CAGGGGCGGG TGGTCGGCAT GGTCGGCGAT GGCATCAACG ACGCACCGGC GCTGGCCAAG
GCGCAGATCG GCTTCGCCAT GGGCGCTGCC GGCACCGACA CGGCCATCGA GACGGCGGAT
GTTGCGCTGA TGGATGACGA CCTGCGCAAG ATCCCCGCCT TCGTCCGCCT GTCCCGCCAG
ACCCACGCCA TTCTCGTGCA GAACATCGTG CTGGCGCTGG GCATCAAGGC GATCTTCCTG
GCCCTGACCC TGGCTGGCGA GGCGACAATG TGGATGGCCG TGTTCGCCGA CATGGGCGTG
AGCCTTCTGG TGGTGTTCAA CGGCCTGCGC CTGCTGCGCA AGTGA
|
|---|
| Protein sequence | MSRCCDHSHE PVAGGGQPVG HEHHAAPQLQ SDEALGGAFT TRIRIEQMDC PTEERLLRDA
LGKLPGVAAL HFNLLQRVLT VGHDEGALTR VLSAIRALGF TPQVEGQAGA PAPAVAPAHK
PWWPLALAGV LATASELVHF AALGPDWLVA LLAVMAIAIC GPSTYRKGWV ALKNRNLNIN
ALMSIAVTGA VLTGQWPEAA MVMVLFTLAE LIEARSLQRA RNAIASLMDL APPRATRRQA
DGSWQEVDVQ AVAVGDVLRV RPGERIGLDG EVIAGASTVN QAPITGESLP LDKGVGDTLF
AGTINQAGSL EYRVTAAARD TTLARIIHAV EEAQGSRAPT QRFVDRFSRI YTPTVFAFAL
AVAVLPPLLA GGAWLDWIYR ALVLLVVACP CALVISTPVT IVSGLAAAAR KGILIKGGVY
LESGRHLALL ALDKTGTLTH GKPVQTDCLS LGDGDTQQLA LWAASLAARS DHPVSQALAR
ALEGQALAEV EAFEALPGRG TRGRIDGRLL HLGNHRLVEE LGLCSPALEQ RLEALERQGK
SVVLLCDEQR ALMLFAVADT LRQSSREAVQ QLHALGVRTC MLSGDNAHTV AAIAEQVGID
EARGDLLPAD KLAWVETRQA QGRVVGMVGD GINDAPALAK AQIGFAMGAA GTDTAIETAD
VALMDDDLRK IPAFVRLSRQ THAILVQNIV LALGIKAIFL ALTLAGEATM WMAVFADMGV
SLLVVFNGLR LLRK
|
|---|
| |