| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4160 |
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| Symbol | |
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| ID | 5105679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4563009 |
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| End bp | 4565255 |
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| Gene Length | 2247 bp |
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| Protein Length | 748 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505424 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001189639 |
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| Protein GI | 146309174 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGATCC TCTCCCGACT ACTCAGGACG CTGTGCTGCG CCGCCCTGCT GCTGGTGCTC
GCAGGCCAGG CCCACGCCAC AGCGGTGCAG CCCGGCCGGA GCGAAGAGAG CTGGACCGTC
AACATGCAGG GCGCGGACAT CCGCGACTTC ATCGAGCAGA TCTCCAACAT CAGCGGCCAG
ACCTTCATCA TCGACCCGCG GGTCAAGGGC CAGGTCACGG TGATCGCCCA GGAGCCCATG
GGCCTGACCG AGCTGTACAA GCTGTTTCTC TCGGTGATGA CCACCCACGG CTTTGCCGTC
ATGCCGCAAG GCGACCAGCT CAGCATCATG CCCAATGCCG AGGCCAGAAG CAGCGCCGGC
AGCCAGGGCA ACCTGGAAAC CCGCGTGCTG CAGGTACAGC ACGGCGCCGC CAATGACCTG
CTGCCGATGA TCCGCCCGCT GGTGGCCAAC CACGGCCACC TGGCCGCGGT GCCCTCGTCC
AACAGCCTGA TCATCAGCGA CGCGCCCGCC AACATCGAAC GCATCGGCGA CCTGATTCGC
CAGCTGGACG ACCGCAGCCA GGACAACTTC AGCGTCTACG AGCTCAAGCA CGCCTGGGTC
AGCGATCTGG CGAACCTGCT CGGCGCCTCG CTGCAGAACG CCCAGGCCGG TGGCGCCCAG
GTCATCGCCG ACCCGCGCAG CAACCGCCTG CTGCTGCTCG GCCCTCGCGA AGCGCGGCTG
CGCCTGCTGA AGCTGGCGCA AAGCCTCGAC ACGCCCAGCT CGCGCTCGGC CAACACGCGG
GTGATACGCC TACGCCATGC CGACGCCAAG CAGCTGGCCG AGACCCTGGG CGATTTCGGC
GACAACCTGA GCCAGAGCCA GGGCAACCAG AGTTCGACGC CCCTGAAACT GATGATCCGC
GCCGACCAGA GCCTCAACGC CATCGTCATC ATGGCCGAAG CCGACATGGT CAGCCTGTTC
GAGGATCTGG TGCGCCAGCT GGATGCGCCG CGCGCGCAGG TACTGGTGGA AGCCGCCATC
GTCGAGATGT CCGGCGACAT CAACGACGCG CTGGGCGTGC AGTGGGCCAT CGACGGCCGC
CACAACGCCC TGGGCGGGGT CAATTTCAGC AACACCGGGC TGTCCATCGG CACCCTGCTC
GGCGCCATCG CCCGCGACGA GACCGCCGAG CTGGCCAAGA CACTGCCCAA CGGAGCGATC
TTCGGCCTGG GCAATGACAA CTTCGGCATG CTGATCACCG CCCTGTCAGC CACCGGCAAG
AGCAATCTGC TGTCCACGCC CACACTGCTG ACCCTGGACA ATCAGCCGGC GGAGATTCTG
GTCGGGCAGA ACGTGCCGTT CCAGACCGGC TCCTACACCA CCGACGCGTC GGGCGCGGGC
AATCCCTTCA CCACCATCGA GCGCAAGGAC ATCGGCGTCA CCCTCAAGGT CACGCCGCAT
ATCAACGACG GCGCCACGCT GCGCCTGGTG ATCGAGCAGG AAATCTCCTC CATCGCTCCC
AGCACCGGCC TCAATGCCCA GGCGGTGGAT CTGGTCACCA ACAAGCGCTC GATCAAGAGC
ACCGTGCTGG CCGATGACGG CCAGGTGATC GTGCTCGGCG GCCTGATTCA GGACGACACC
TCGGCCAGCG CGAGCAAGGT TCCCCTGCTG GGCGACATCC CGGGCGTCGG CCGGCTGTTC
CGCTCGACCC GCGACGCACG GCAGAAACGC AACCTGATGG TCTTCCTGCG TCCGAGCGTG
GCGCGTGACG GCGTAGGCCT GGCCAACCTG AGCCTCGGCA AGTACCGCGA CCTGCGCCTG
CTCGGCCAGG CCAGCGGCTA CCACCACCTG CCGCCGCAGG CCCACGATCT GTTCAGCCAG
GACGCGGCCA CGCCCGTCAC CGATCTGCGC CAGCCCAAGC TCCAGCCTGC GCAACCACAG
CCACAGCCAC AGCCACAACG CAGCCTGATC GAGACGCCCA GGCCGGTCGA TCCGGCCAGT
CTGGGCGATG GTCAGGGCGG CGACGTCGCG ACGGCGCGCG CCCACGAGCG CTATACCATT
CGCCTGATCG AGGGCGAAAG CCAGGCGTTC ATGCAGGCCC TGCTCGGCCG TCATCCCGAC
CAGCCGCTGC GCCTGCAGCA GCACGAAAGC GGCACTCGCT ACGCCCTGCT CTATGGCAGC
TATCCGAGCC GCGAGCTGGC CCTCAAGGCG CTGGCTCACC TGCCCGAGCA ACTGCCCAGC
CGCACGGCTG CGGCAATCCC CGAGTAG
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| Protein sequence | MPILSRLLRT LCCAALLLVL AGQAHATAVQ PGRSEESWTV NMQGADIRDF IEQISNISGQ
TFIIDPRVKG QVTVIAQEPM GLTELYKLFL SVMTTHGFAV MPQGDQLSIM PNAEARSSAG
SQGNLETRVL QVQHGAANDL LPMIRPLVAN HGHLAAVPSS NSLIISDAPA NIERIGDLIR
QLDDRSQDNF SVYELKHAWV SDLANLLGAS LQNAQAGGAQ VIADPRSNRL LLLGPREARL
RLLKLAQSLD TPSSRSANTR VIRLRHADAK QLAETLGDFG DNLSQSQGNQ SSTPLKLMIR
ADQSLNAIVI MAEADMVSLF EDLVRQLDAP RAQVLVEAAI VEMSGDINDA LGVQWAIDGR
HNALGGVNFS NTGLSIGTLL GAIARDETAE LAKTLPNGAI FGLGNDNFGM LITALSATGK
SNLLSTPTLL TLDNQPAEIL VGQNVPFQTG SYTTDASGAG NPFTTIERKD IGVTLKVTPH
INDGATLRLV IEQEISSIAP STGLNAQAVD LVTNKRSIKS TVLADDGQVI VLGGLIQDDT
SASASKVPLL GDIPGVGRLF RSTRDARQKR NLMVFLRPSV ARDGVGLANL SLGKYRDLRL
LGQASGYHHL PPQAHDLFSQ DAATPVTDLR QPKLQPAQPQ PQPQPQRSLI ETPRPVDPAS
LGDGQGGDVA TARAHERYTI RLIEGESQAF MQALLGRHPD QPLRLQQHES GTRYALLYGS
YPSRELALKA LAHLPEQLPS RTAAAIPE
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