Gene Pmen_4159 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4159 
Symbol 
ID5105678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4561584 
End bp4562744 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content67% 
IMG OID640505423 
Productcoproporphyrinogen III oxidase 
Protein accessionYP_001189638 
Protein GI146309173 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGATA CCGCTGGTGG GCGTTTCCTG CTCCCGCCCC TCGCGCTCTA TATCCATATC 
CCCTGGTGCG TGCGCAAATG CCCCTACTGC GACTTCAACT CCCATGCCGC TGGGCCGACG
CTGCCTGAAG AGGAATACGT CGACGCCCTG CTCGCCGACC TCGATGCCAA CCTGCGGCAC
GTGCACGGCC GGCCGCTGAC GTCGATCTTC TTCGGTGGCG GCACCCCCAG CCTGTTCTCC
GACCGCGCCC TGGGCCGTCT GCTGGAAGGC GTCGAACGGC GCGTGGCCTT CGCCCCGGAT
ATCGAAATCA CCCTGGAAGC CAACCCCGGC ACCTTCGAGC AGGCCAAGTT CAAGGGCTAC
CGGGCGCTGG GCATCAATCG CCTGTCCATC GGCGTGCAGA GTTTTCAGGA AGCCAAGCTC
AAGGCGCTGG GGCGCATCCA CGATGGCAAC GAGGCCGTAC GGGCCGCCGA TATGGCGCGC
GCTGCCGGCT TCGACAACTT CAACCTCGAC CTGATGCATG GCCTGCCCGA GCAGAGCATC
GAGGACGCGC TGTTCGACCT GCGCACCGCC ATCAGCCAGG GCCCGACGCA CCTGTCCTGG
TACCAGCTGA CCATGGAGCC GAACACGGTG TTCTGGAGCC AGCCGCCGGT GCTGCCGGAA
GACGATCTAC TGTGGGACAT CCAGGAGGCC GGCCAGGCCC TGCTGGCCGC CGAGGGTTAC
GCCCAGTACG AGGTGTCCGC CTATGCCCAG ACGGGCAAGC AGGCCCGGCA CAACCTCAAC
TACTGGACCT TCGGCGATTT TCTCGGCATC GGTGCCGGCG CCCATGCCAA GCTCAGCGCC
CCCGACGGGC GCATCCTGCG CAGCTGGAAG ACGCGCCTGC CCAAGGACTA TCTGGACCCG
GCCAAGGTCT TCCAGGCCGG CGAGCGCGTA CTCGGCGCCG ACGAACTGCC CTTCGAGTTC
CTGATGAACG TGCTGCGCCT CACAGACGGC GTGCCGGCCC GCCTGTTCAG CGAGCGCACC
GGCCTGCCGC TGGCCAGCCT GGACGCTGCC CGCGCCGAGG CCGAGGGACG CAAGCTGCTG
CGCGCCGAGC CCGAACGGCT ATGCGCCACC GCCGAAGGCC AGCTGTTTCT CAACGACCTG
CTGCAACACT TTCTGCCCTG A
 
Protein sequence
MSDTAGGRFL LPPLALYIHI PWCVRKCPYC DFNSHAAGPT LPEEEYVDAL LADLDANLRH 
VHGRPLTSIF FGGGTPSLFS DRALGRLLEG VERRVAFAPD IEITLEANPG TFEQAKFKGY
RALGINRLSI GVQSFQEAKL KALGRIHDGN EAVRAADMAR AAGFDNFNLD LMHGLPEQSI
EDALFDLRTA ISQGPTHLSW YQLTMEPNTV FWSQPPVLPE DDLLWDIQEA GQALLAAEGY
AQYEVSAYAQ TGKQARHNLN YWTFGDFLGI GAGAHAKLSA PDGRILRSWK TRLPKDYLDP
AKVFQAGERV LGADELPFEF LMNVLRLTDG VPARLFSERT GLPLASLDAA RAEAEGRKLL
RAEPERLCAT AEGQLFLNDL LQHFLP