Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4159 |
Symbol | |
ID | 5105678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4561584 |
End bp | 4562744 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640505423 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_001189638 |
Protein GI | 146309173 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGATA CCGCTGGTGG GCGTTTCCTG CTCCCGCCCC TCGCGCTCTA TATCCATATC CCCTGGTGCG TGCGCAAATG CCCCTACTGC GACTTCAACT CCCATGCCGC TGGGCCGACG CTGCCTGAAG AGGAATACGT CGACGCCCTG CTCGCCGACC TCGATGCCAA CCTGCGGCAC GTGCACGGCC GGCCGCTGAC GTCGATCTTC TTCGGTGGCG GCACCCCCAG CCTGTTCTCC GACCGCGCCC TGGGCCGTCT GCTGGAAGGC GTCGAACGGC GCGTGGCCTT CGCCCCGGAT ATCGAAATCA CCCTGGAAGC CAACCCCGGC ACCTTCGAGC AGGCCAAGTT CAAGGGCTAC CGGGCGCTGG GCATCAATCG CCTGTCCATC GGCGTGCAGA GTTTTCAGGA AGCCAAGCTC AAGGCGCTGG GGCGCATCCA CGATGGCAAC GAGGCCGTAC GGGCCGCCGA TATGGCGCGC GCTGCCGGCT TCGACAACTT CAACCTCGAC CTGATGCATG GCCTGCCCGA GCAGAGCATC GAGGACGCGC TGTTCGACCT GCGCACCGCC ATCAGCCAGG GCCCGACGCA CCTGTCCTGG TACCAGCTGA CCATGGAGCC GAACACGGTG TTCTGGAGCC AGCCGCCGGT GCTGCCGGAA GACGATCTAC TGTGGGACAT CCAGGAGGCC GGCCAGGCCC TGCTGGCCGC CGAGGGTTAC GCCCAGTACG AGGTGTCCGC CTATGCCCAG ACGGGCAAGC AGGCCCGGCA CAACCTCAAC TACTGGACCT TCGGCGATTT TCTCGGCATC GGTGCCGGCG CCCATGCCAA GCTCAGCGCC CCCGACGGGC GCATCCTGCG CAGCTGGAAG ACGCGCCTGC CCAAGGACTA TCTGGACCCG GCCAAGGTCT TCCAGGCCGG CGAGCGCGTA CTCGGCGCCG ACGAACTGCC CTTCGAGTTC CTGATGAACG TGCTGCGCCT CACAGACGGC GTGCCGGCCC GCCTGTTCAG CGAGCGCACC GGCCTGCCGC TGGCCAGCCT GGACGCTGCC CGCGCCGAGG CCGAGGGACG CAAGCTGCTG CGCGCCGAGC CCGAACGGCT ATGCGCCACC GCCGAAGGCC AGCTGTTTCT CAACGACCTG CTGCAACACT TTCTGCCCTG A
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Protein sequence | MSDTAGGRFL LPPLALYIHI PWCVRKCPYC DFNSHAAGPT LPEEEYVDAL LADLDANLRH VHGRPLTSIF FGGGTPSLFS DRALGRLLEG VERRVAFAPD IEITLEANPG TFEQAKFKGY RALGINRLSI GVQSFQEAKL KALGRIHDGN EAVRAADMAR AAGFDNFNLD LMHGLPEQSI EDALFDLRTA ISQGPTHLSW YQLTMEPNTV FWSQPPVLPE DDLLWDIQEA GQALLAAEGY AQYEVSAYAQ TGKQARHNLN YWTFGDFLGI GAGAHAKLSA PDGRILRSWK TRLPKDYLDP AKVFQAGERV LGADELPFEF LMNVLRLTDG VPARLFSERT GLPLASLDAA RAEAEGRKLL RAEPERLCAT AEGQLFLNDL LQHFLP
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