| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4149 |
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| Symbol | |
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| ID | 5105668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4552902 |
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| End bp | 4553936 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640505413 |
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| Product | twitching motility protein |
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| Protein accession | YP_001189628 |
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| Protein GI | 146309163 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.84862 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCA CTGAGCTGCT CGCCTTCAGC GCCAAGCAAG GTGCGTCGGA TTTGCACCTC
TCGGCGGGTC TGCCGCCGAT GATCCGCGTC GACGGCGATG TGCGCCGCAT CAACCTGCCG
CCGCTGGATC ACAAGCAGGT ACACGCGCTG ATCTACGACA TCATGAACGA CAAGCAGCGC
AAGGATTACG AAGAGTTCCT CGAGACCGAC TTCTCCTTCG AGGTGCCGGG CGTGGCGCGC
TTCCGGGTCA ACGCCTTCAA CCAGAACCGC GGTGCCGGTG CGGTGTTCCG TACCATTCCC
TCGAAGGTGC TGACCATGGA GGACCTCGGC ATGGGCGAGG TGTTCCGCAA GATCACCGAC
GTGCCGCGCG GCCTGGTGCT GGTTACTGGC CCGACCGGCT CGGGCAAGTC GACCACCCTG
GCGGCGATGC TCGACTACCT CAACAGCAAC AAGTACCACC ATATCCTCAC CATCGAGGAC
CCCATCGAAT TCGTTCACGA GTCGAAGAAG TGCCTGGTCA ACCAGCGTGA GGTGCACCGC
GACACCCACG GCTTCTCCGA AGCGCTGCGC TCGGCCCTGC GTGAAGACCC GGACATCATC
CTGGTGGGCG AGATGCGCGA CCTGGAAACC ATCCGCCTGG CGCTGACCGC CGCGGAAACC
GGCCACCTGG TATTCGGCAC CCTGCACACC ACCTCGGCGG CCAAGACCAT CGACCGTGTG
GTCGACGTGT TCCCCGCCGA AGAGAAATCC ATGGTCCGCT CGATGCTCTC CGAATCGCTG
CAGGCGGTGA TCTCGCAGAC CCTGCTGAAG AAGATCGGCG GCGGTCGTGT CGCCGCTCAC
GAAATCATGA TCGGCACCCC GGCCATCCGT AACCTGATCC GCGAGGACAA GGTGGCGCAG
ATGTATTCGG CGATCCAGAC CGGCGGCGCC CTGGGCATGC AGACCCTCGA TGCCTGCCTG
AAGACGCTGG TGTCCAAAGG CCTGGTCAGC CGCGACAGCG CGCGCGAGAA GGCCAAGAGC
CCGGAAAACT TCTAA
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| Protein sequence | MDITELLAFS AKQGASDLHL SAGLPPMIRV DGDVRRINLP PLDHKQVHAL IYDIMNDKQR
KDYEEFLETD FSFEVPGVAR FRVNAFNQNR GAGAVFRTIP SKVLTMEDLG MGEVFRKITD
VPRGLVLVTG PTGSGKSTTL AAMLDYLNSN KYHHILTIED PIEFVHESKK CLVNQREVHR
DTHGFSEALR SALREDPDII LVGEMRDLET IRLALTAAET GHLVFGTLHT TSAAKTIDRV
VDVFPAEEKS MVRSMLSESL QAVISQTLLK KIGGGRVAAH EIMIGTPAIR NLIREDKVAQ
MYSAIQTGGA LGMQTLDACL KTLVSKGLVS RDSAREKAKS PENF
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