| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4138 |
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| Symbol | |
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| ID | 5105657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4539535 |
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| End bp | 4541355 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640505402 |
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| Product | GTP-binding protein TypA |
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| Protein accession | YP_001189617 |
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| Protein GI | 146309152 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU
[TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.781613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCGAAA AACTGCGCAA CATCGCCATC ATCGCCCACG TCGACCATGG CAAAACCACC
CTCGTCGACA AACTCCTGCG TCTGTCCGGC ACCCTCGACC GCAAAGAAGC GGAAAACGAG
CGCGTCATGG ACTCCAACGA CCAGGAAAAA GAGCGCGGCA TCACCATTCT GGCCAAGAAC
ACCGCGCTGA AGTGGAACGA CTACAACATC AACATCGTCG ACACCCCCGG GCACGCCGAC
TTCGGCGGTG AAGTAGAGCG CGTGATGAGC ATGGTCGACT CCGTGCTGCT GGTGGTCGAC
GCCCAAGACG GCCCCATGCC GCAAACCCGC TTCGTGACCC AGAAGGCGTT CAAGGCCGGT
CTGCGTCCGA TCGTCGTGGT CAACAAGATC GACCGTCCGG GCGCGCGCCC TGACTGGGTC
ATCGACCAGA TCTTCGACCT GTTCGACAAC CTCGGCGCCA CCGACGAGCA GCTGGACTTC
CCGATCGTCT ACGCCTCGGC CCTGAACGGC ATCGCCGGCA TGGACCACGA GAAGATGGAC
GACAACATGG ATGCTCTGTT CCAGGCCATC GTCGATCACG TCCCGGCGCC GGTCGTCGAC
GTCAACGGTC CGTTCCAGAT GCAGATCTCG CAGCTTGACT ACAACAGCTT CCTCGGCGTG
ATCGGCATCG GCCGCATTGC CCGCGGCACC ATCAAGGCCA ACAGCCCGGT GACCGCCATC
GGCGCCGACG GCAAGAAGCG CAACGGCCGT ATCCTGAAAA TCATGGGCCA CTCCGGCCTG
CAGCGCGTCG AGGTTCAGGA AGCCCAGGCT GGCGACATCG TCTGCGTATC GGGTATGGAC
GAGCTGTACA TTTCCGACAC CCTGTGCGAC CAGAACGACG TCGAGGCTCT GCCGCCGCTG
ACCGTTGACC AGCCGACCGT GAGCATGACC TTCCAGGTCA ACGACTCGCC GTTCGCCGGC
AAGGAAGGCA AGTTCGTCAC CAGCCGCAAC ATCAAGGACC GCCTGGAGAA GGAACTGCTG
CACAACGTCG CCCTGCGCGT CGAGCCGGGC GAGACCCCGG AGAAGTTCAA GGTCTCCGGC
CGTGGCGAAC TGCACCTGTC GGTACTGATC GAAACCATGC GCCGTGAAGG CTTCGAGCTG
GCCGTAGGTC GTCCGGAAGT GGTGATCATC GAGAACGAGG CCGGCGAGAA GCAGGAGCCG
TACGAGAACG TCACCATCGA CATCGAAGAA CAGCACCAGG GTTCGGTGAT GGAGCAGATG
GGCCTGCGCA AGGGCGATCT GACCAACATG GTTCCCGATG GCAAGGGTCG TATCCGCCTG
GAGTACACCA TCCCGGCACG CGGTCTGATC GGCTTCCGTA ACAACTTCCT GACCCTGACC
TCGGGCAGCG GCATCCTGAC CTCGACCTTC AGCCACTACG GCGCGATCAA GGCCGGTGAA
GTCACCAACC GTCAGAACGG CGTACTGGTC TCCATGGCCA CCGGCACCGC GCTGACCTAC
TCGCTGGAAA CCCTGCAGGC GCGCGGCAAG CTGTTCCTCG AGCCGGGTCA GGACATCTAC
GAAGGCCAGC TGTGCGGCAT CAACAGCCGT GACAACGACC TGGTGATCAA CCCCACCAAA
GGCAAGAAGC TCGACAACAT GCGCGCTTCC GGCAAGGACG AAGTCATCGC CCTGGTTCCG
CCGATCAAGT TCACCCTCGA GCAGGCGCTG GAATTCATTG CCGATGACGA GCTGGTGGAA
GTGACGCCGA AGTCGATCCG CCTGCGTAAG AAGTACCTGA ACGAGAACGA CCGCAAGCGC
TTCGAACGCG CCAAGGTCTG A
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| Protein sequence | MIEKLRNIAI IAHVDHGKTT LVDKLLRLSG TLDRKEAENE RVMDSNDQEK ERGITILAKN
TALKWNDYNI NIVDTPGHAD FGGEVERVMS MVDSVLLVVD AQDGPMPQTR FVTQKAFKAG
LRPIVVVNKI DRPGARPDWV IDQIFDLFDN LGATDEQLDF PIVYASALNG IAGMDHEKMD
DNMDALFQAI VDHVPAPVVD VNGPFQMQIS QLDYNSFLGV IGIGRIARGT IKANSPVTAI
GADGKKRNGR ILKIMGHSGL QRVEVQEAQA GDIVCVSGMD ELYISDTLCD QNDVEALPPL
TVDQPTVSMT FQVNDSPFAG KEGKFVTSRN IKDRLEKELL HNVALRVEPG ETPEKFKVSG
RGELHLSVLI ETMRREGFEL AVGRPEVVII ENEAGEKQEP YENVTIDIEE QHQGSVMEQM
GLRKGDLTNM VPDGKGRIRL EYTIPARGLI GFRNNFLTLT SGSGILTSTF SHYGAIKAGE
VTNRQNGVLV SMATGTALTY SLETLQARGK LFLEPGQDIY EGQLCGINSR DNDLVINPTK
GKKLDNMRAS GKDEVIALVP PIKFTLEQAL EFIADDELVE VTPKSIRLRK KYLNENDRKR
FERAKV
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