Gene Pmen_4132 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4132 
Symbol 
ID5105651 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4531727 
End bp4532980 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content65% 
IMG OID640505396 
Productserine hydroxymethyltransferase 
Protein accessionYP_001189611 
Protein GI146309146 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0112] Glycine/serine hydroxymethyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.88766e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.517769 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAGCA AGCAAGATCA GATTCAGGGT TACGACGACG AGTTGCTCGC GGCGATCGAT 
CAGGAAGAAC GCCGTCAGGA AGAGCACATC GAGCTGATCG CCTCGGAAAA CTACTGCAGC
CAGCGCGTGA TGGAAGCGCA GGGCAGCGGC CTGACCAACA AGTACGCCGA GGGCTACCCG
GGCAAGCGCT ACTACGGTGG CTGCGAGTAT GTCGACAAGG TCGAGCAGCT CGCCATCGAT
CGTGCCAAGC AGCTGTTCGG CGCCGACTTC GCCAACGTTC AACCGCATTC CGGTTCCTCG
GCCAACAGCG CCGTGTACCT GGCGCTGCTC AATGCCGGCG ACACCATCCT CGGCATGAGC
CTGGCCCACG GCGGCCACCT GACCCACGGC GCCAAGGTGT CGTCTTCGGG CAAGCTGTAC
AACGCCGTGC AGTACGGGCT GAACCCCGCC ACCGGCCTGA TCGACTACGA CGAGGTCGAG
CGCCTGGCCG TGGAGCACAA GCCGAAGATG ATCGTGGCCG GCTTCTCCGC CTATTCCAAG
ACCCTGGATT TCCCGCGCTT TCGCGCCATC GCCGACAAGG TCGGTGCACT CCTGTTCGTC
GACATGGCGC ACGTCGCCGG CCTGGTTGCC GCTGGCCTGT ATCCGAACCC GATTCCCTTC
GCCGATGTGG TCACCACCAC CACCCACAAG ACCCTGCGTG GTCCGCGCGG CGGCCTGATC
CTGGCCAAGG CCAACGAAGA GATCGAGAAG AAACTCAACT CCGCCGTGTT CCCCGGCGCT
CAGGGCGGCC CGCTGATGCA CGTGATCGCA GCCAAGGCGG TGTGCTTCAA GGAGGCCATG
GAGCCCGAGT TCAAGGCTTA CCAGCAGCAG GTCATCGACA ACGCCCAGGC CATGGCCAAG
GTCTTCATCG AGCGCGGCTA CGAGGTGGTG TCCGGTGGCA CCGACAACCA CCTGTTCCTG
CTCAGCCTGA TCAAGCAGGG CCTGACCGGC AAGGAGGCCG ACGCCGCGCT CGGTCGTGCC
GGCATCACCG TGAACAAGAA CGCCGTGCCG AACGACCCGC AGTCGCCGTT CGTGACCTCG
GGCATCCGCA TCGGTACCCC GGCGGTGACC ACCCGCGGCT TCAAGGTCGC CCAGTGTCAG
GCGCTGGCCG GTTGGATCTG CGACATCCTC GACCACCTCG GCGATGCCGA TGTCGAGGCG
CAGGTGGCCA AGCTGGTGGC CGGGTTGTGC GCGGACTACC CGGTGTATCG CTAA
 
Protein sequence
MFSKQDQIQG YDDELLAAID QEERRQEEHI ELIASENYCS QRVMEAQGSG LTNKYAEGYP 
GKRYYGGCEY VDKVEQLAID RAKQLFGADF ANVQPHSGSS ANSAVYLALL NAGDTILGMS
LAHGGHLTHG AKVSSSGKLY NAVQYGLNPA TGLIDYDEVE RLAVEHKPKM IVAGFSAYSK
TLDFPRFRAI ADKVGALLFV DMAHVAGLVA AGLYPNPIPF ADVVTTTTHK TLRGPRGGLI
LAKANEEIEK KLNSAVFPGA QGGPLMHVIA AKAVCFKEAM EPEFKAYQQQ VIDNAQAMAK
VFIERGYEVV SGGTDNHLFL LSLIKQGLTG KEADAALGRA GITVNKNAVP NDPQSPFVTS
GIRIGTPAVT TRGFKVAQCQ ALAGWICDIL DHLGDADVEA QVAKLVAGLC ADYPVYR