Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4069 |
Symbol | |
ID | 5106366 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4456191 |
End bp | 4457726 |
Gene Length | 1536 bp |
Protein Length | 511 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640505333 |
Product | histidine ammonia-lyase |
Protein accession | YP_001189548 |
Protein GI | 146309083 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2986] Histidine ammonia-lyase |
TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.790613 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACCC TGAACCTGAA ACCCGGCCAG CTGACCCTGG CCGACCTGCG CGCCGCCTAC CAGGCGCCCG TGCACCTGAC CCTGGACGCC AGCGCCCACC AGGCCATCGA CGCCAGCGTC GCCTGCGTCA ACCAGATCAT CGCCGAGGGG CGCACCGCCT ACGGCATCAA CACCGGTTTC GGCCTGCTGG CCTCGACCCG CATCGCCAAC GCCGATCTGG AAAAGCTGCA GCGCTCGCTG GTGCTGTCCC ACGCCGCCGG CATCGGCGAG CCGCTGAGCG ATGCCATGGT GCGCCTGATC ATGCTGCTCA AGATCAACAG CCTGGCGCGC GGCTTCTCCG GCATCCGCCG CAAGGTGATC GATGCGCTGA TCGCCCTGGT CAATGCCGAG GTCTATCCGC ATATCCCGCT GAAGGGCTCG GTCGGCGCGT CCGGCGACCT GGCGCCGCTG GCGCATATGT CGCTGGTGCT GCTCGGCGAA AGCCAGGCGC GCTACAAGGG TGAATGGCTG CCGGCCACCG AGGCGCTGGC CATCGCCGGC CTGGAGCCCA TGACCCTGGC CGCCAAGGAG GGCCTGGCCC TGCTCAACGG CACCCAGGTG TCCACCGCCT ACGCCCTGCG CGGGCTGTTC GAGGCCGAGG ACCTGTACGC CGCCGCCAGC GTCTGCGGCG CGCTCAGCGT CGAGGCGCTG CTGGGTTCGC GTTCGCCCTT CGATGCGCGT ATCCATGCCG CCCGTGGTCA GCGCGGGCAG ATCGACGCGG CAGCGGCGTT CCGTCACCTG CTCGGCGACA GCAGCGAGAT CGGCCGTTCC CACGCGGCCT GCGACAAGGT GCAGGACCCG TACTCGCTGC GCTGCCAGCC GCAGGTCATG GGCGCCTGCC TGACCCAGCT ACGTCAGGCC GCCGAGGTGC TCGGCGTCGA GGCCAACGCG GTATCCGACA ACCCGCTGGT GTTCGCCGCC GAAGGCGAGG TGATTTCCGG TGGCAACTTC CACGCCGAGC CGGTGGCCAT GGCCGCCGAC AATATCGCCC TGGCCATCGC CGAGATCGGC TCGCTGTCCG AACGGCGCAT CTCGCTGATG ATGGACAAGC ACATGTCGCA ACTGCCGCCG TTCCTGGTGG CCAATGGCGG GGTCAACTCC GGCTTCATGA TCGCCCAGGT GACGGCGGCA GCATTGGCCA GCGACAACAA GGCGCTGTCC CACCCGCACA GCGTCGACAG CCTGCCCACC TCGGCCAACC AGGAAGACCA CGTGTCCATG GCACCGGGTG CGGGCAAGCG CCTGTGGGAA ATGGCCGCCA ACACCCGCGG CATCCTCGCC GTGGAATGGC TGGGCGCCTG CCAGGGCCTG GACTTCCGCG AGGGCCTGAA GAGCACGCCG GCGCTGGAGC AGGCGCGCCA GACGCTGCGC GCCAAGGTGC CGTACTACGT CGAGGACCGC TTCTTCGCCC CGGACATCGC CGCCGCTGAT GCTCTGCTCG CCGAGCGCGT GCTGACGCCG CTGCTGCCGG CCGGCATGTT GCCGTCGGTA GGCTGA
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Protein sequence | MNTLNLKPGQ LTLADLRAAY QAPVHLTLDA SAHQAIDASV ACVNQIIAEG RTAYGINTGF GLLASTRIAN ADLEKLQRSL VLSHAAGIGE PLSDAMVRLI MLLKINSLAR GFSGIRRKVI DALIALVNAE VYPHIPLKGS VGASGDLAPL AHMSLVLLGE SQARYKGEWL PATEALAIAG LEPMTLAAKE GLALLNGTQV STAYALRGLF EAEDLYAAAS VCGALSVEAL LGSRSPFDAR IHAARGQRGQ IDAAAAFRHL LGDSSEIGRS HAACDKVQDP YSLRCQPQVM GACLTQLRQA AEVLGVEANA VSDNPLVFAA EGEVISGGNF HAEPVAMAAD NIALAIAEIG SLSERRISLM MDKHMSQLPP FLVANGGVNS GFMIAQVTAA ALASDNKALS HPHSVDSLPT SANQEDHVSM APGAGKRLWE MAANTRGILA VEWLGACQGL DFREGLKSTP ALEQARQTLR AKVPYYVEDR FFAPDIAAAD ALLAERVLTP LLPAGMLPSV G
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