Gene Pmen_4053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4053 
Symbol 
ID5106350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4438117 
End bp4438950 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content59% 
IMG OID640505317 
ProductAraC family transcriptional regulator 
Protein accessionYP_001189532 
Protein GI146309067 
COG category[S] Function unknown 
COG ID[COG3708] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCCCG TTAACAAAGC TCTTTGGCTG ATCGAAACTG AACTCGACAC CGCGCTTGAT 
CTGGAGCGAC TCGCCAGTGT CAGTGGACTG TCGCGCTTCA CCCTGTCGCG GGTTTTTGCC
GGCGCCACAG GATGGTCGGT GATGCGCTAT GTCAAGGCGC GCCGCTTGAG CTGCGCAGCC
CATCGGTTGG CAAAAGGCGC ACCGGATATC CTCGAAGTCG CTCTGGCGGT TGGTTACGGT
TCTCATGAGG CATTTACGCG AGCGTTCCGC GACCACTTCG GGATAACCCC CGAGACATTG
CGTGCGAGCG GTGATCTGAA CGGAATAGAA CTGAGGGAGG CCCTGCGCAT GCACGCCACT
ACTGGTTATG CACTATCGGC ACCACGCTTC GTCGATGCTG AAGAGCTGCT GATCGTTGGA
CTAAGTGAGC GTTTCAACGT CGAGACGGCC CAGGGTATCG CGGCGCTTTG GCAGCGTTTC
GGGCCTTATA TCGGTCGGAT ACCGGGGCAG CAAGGTAGTG AGACTTTCGG GGTGTGCTGC
AACCCAGAGG ATGATGGAAG TTTTGAATAC ATCGCTGGGG TACTGGTGAA CCGTGCTGCT
GAAGTACCGG CGGGCTTAAC CCTGCAACGT TTGGCAGCGC ACCGCTACGC GGTGTTTCTG
CACGAGGGGC ACATCTCCAG CATCCACGAG ACCTTCAATG CGATATTTCA GCACTGGTTG
CCCACCGCAG GGGTGCAAAC TGCCGCAGCG CCGGAGTTCG AGCGTTATAG CGAAGACTTC
GATCCGATGG CGGGAACCGG CAGGGTGGAG ATCTGGGTGC CGCTACGAGA TTAG
 
Protein sequence
MDPVNKALWL IETELDTALD LERLASVSGL SRFTLSRVFA GATGWSVMRY VKARRLSCAA 
HRLAKGAPDI LEVALAVGYG SHEAFTRAFR DHFGITPETL RASGDLNGIE LREALRMHAT
TGYALSAPRF VDAEELLIVG LSERFNVETA QGIAALWQRF GPYIGRIPGQ QGSETFGVCC
NPEDDGSFEY IAGVLVNRAA EVPAGLTLQR LAAHRYAVFL HEGHISSIHE TFNAIFQHWL
PTAGVQTAAA PEFERYSEDF DPMAGTGRVE IWVPLRD