Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4053 |
Symbol | |
ID | 5106350 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4438117 |
End bp | 4438950 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640505317 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001189532 |
Protein GI | 146309067 |
COG category | [S] Function unknown |
COG ID | [COG3708] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCCCG TTAACAAAGC TCTTTGGCTG ATCGAAACTG AACTCGACAC CGCGCTTGAT CTGGAGCGAC TCGCCAGTGT CAGTGGACTG TCGCGCTTCA CCCTGTCGCG GGTTTTTGCC GGCGCCACAG GATGGTCGGT GATGCGCTAT GTCAAGGCGC GCCGCTTGAG CTGCGCAGCC CATCGGTTGG CAAAAGGCGC ACCGGATATC CTCGAAGTCG CTCTGGCGGT TGGTTACGGT TCTCATGAGG CATTTACGCG AGCGTTCCGC GACCACTTCG GGATAACCCC CGAGACATTG CGTGCGAGCG GTGATCTGAA CGGAATAGAA CTGAGGGAGG CCCTGCGCAT GCACGCCACT ACTGGTTATG CACTATCGGC ACCACGCTTC GTCGATGCTG AAGAGCTGCT GATCGTTGGA CTAAGTGAGC GTTTCAACGT CGAGACGGCC CAGGGTATCG CGGCGCTTTG GCAGCGTTTC GGGCCTTATA TCGGTCGGAT ACCGGGGCAG CAAGGTAGTG AGACTTTCGG GGTGTGCTGC AACCCAGAGG ATGATGGAAG TTTTGAATAC ATCGCTGGGG TACTGGTGAA CCGTGCTGCT GAAGTACCGG CGGGCTTAAC CCTGCAACGT TTGGCAGCGC ACCGCTACGC GGTGTTTCTG CACGAGGGGC ACATCTCCAG CATCCACGAG ACCTTCAATG CGATATTTCA GCACTGGTTG CCCACCGCAG GGGTGCAAAC TGCCGCAGCG CCGGAGTTCG AGCGTTATAG CGAAGACTTC GATCCGATGG CGGGAACCGG CAGGGTGGAG ATCTGGGTGC CGCTACGAGA TTAG
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Protein sequence | MDPVNKALWL IETELDTALD LERLASVSGL SRFTLSRVFA GATGWSVMRY VKARRLSCAA HRLAKGAPDI LEVALAVGYG SHEAFTRAFR DHFGITPETL RASGDLNGIE LREALRMHAT TGYALSAPRF VDAEELLIVG LSERFNVETA QGIAALWQRF GPYIGRIPGQ QGSETFGVCC NPEDDGSFEY IAGVLVNRAA EVPAGLTLQR LAAHRYAVFL HEGHISSIHE TFNAIFQHWL PTAGVQTAAA PEFERYSEDF DPMAGTGRVE IWVPLRD
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