Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4025 |
Symbol | |
ID | 5106322 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4401293 |
End bp | 4402318 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640505288 |
Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
Protein accession | YP_001189504 |
Protein GI | 146309039 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.916408 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGTAC TGGGATTGGA AACTTCCTGC GATGAAACCG GCGTCGCGCT CTATGACAGC GAGCGCGGCC TGCTGGCCGA CGCCCTGTTC AGCCAGATCG ACCTGCATCG CATCTATGGC GGCGTGGTGC CGGAATTGGC CTCGCGCGAC CACGTCAAGC GCATGCTGCC GCTGATCCGC CAGGTGCTCG ACGAGGCCGG GCGTGAGCCG AGCGATATCG ATGCGCTGGC CTATACCGCA GGGCCCGGCC TGGTGGGAGC GCTGCTGGTC GGTGCCTCCT GCGCGCAGGC GCTGGCCTTC GCCTGGGGTG TGCCGGCCGT TGGCGTGCAC CATATGGAAG GCCACCTGCT GGCGCCGATG CTCGAGGAGC AGCCGCCGGC CTTTCCCTTC GTTGCCCTGC TGGTTTCCGG CGGTCACACC CAGTTGGTGC GGGTCGACGG CATCGGCCAG TACCAGTTGC TCGGCGAGTC GCTGGACGAT GCGGCCGGTG AGGCCTTCGA CAAGACCGCC AAGCTGATGG GGCTGAATTA TCCCGGTGGC CCGGAGATCG CCAAACTGGC CGAGCAGGGC ACGCCGGGGC GCTTCGTCTT CCCGCGGCCG ATGACCGACC GTCCGGGGCT GGATTTCAGC TTCAGCGGCC TCAAGACCTT CGCCCTGAAC ACCTGGCAGC AGTGCCGCGA CAGCGGCGAC GACCTCGACC AAGCCCGCCG CGACATCGCG CTGGCCTTCC AGCAGGCGGT GGTTGAGACT CTGACCATCA AGTGCAAGCG CGCGCTCAAG CAGACCGGCC TGAACAGCCT GGTAATCGCC GGCGGGGTGA GTGCCAACAA GGCCCTGCGC GAGCATCTGG AGCGCATGCT GGGTGAGCTG AAGGGCAAGG TGTTCTACGC GCGGCCGCGG TTCTGCACCG ACAACGGCGC GATGATCGCC TACGCCGGTT GCCAGCGGTT GCTGGCCGGG CAGCATGAGG ACCTGGCGAT CAAGGTGCAG GCGCGCTGGC CGATGGAGTC GCTGCCGGCG CTGTAA
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Protein sequence | MLVLGLETSC DETGVALYDS ERGLLADALF SQIDLHRIYG GVVPELASRD HVKRMLPLIR QVLDEAGREP SDIDALAYTA GPGLVGALLV GASCAQALAF AWGVPAVGVH HMEGHLLAPM LEEQPPAFPF VALLVSGGHT QLVRVDGIGQ YQLLGESLDD AAGEAFDKTA KLMGLNYPGG PEIAKLAEQG TPGRFVFPRP MTDRPGLDFS FSGLKTFALN TWQQCRDSGD DLDQARRDIA LAFQQAVVET LTIKCKRALK QTGLNSLVIA GGVSANKALR EHLERMLGEL KGKVFYARPR FCTDNGAMIA YAGCQRLLAG QHEDLAIKVQ ARWPMESLPA L
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