| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4011 |
|---|
| Symbol | |
|---|
| ID | 5110234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4387544 |
|---|
| End bp | 4388836 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640505274 |
|---|
| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
|---|
| Protein accession | YP_001189490 |
|---|
| Protein GI | 146309025 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGACCA AGCTTTCTGA TCGCCTGCGC CCCCTGCTGT TGGGCGCGGC GCTGCTGGCG
GCAACGGCTC AGGCCCAAGT TCGCCCTCTC GACCGCGTAG TGGCCATCGT CGACAACGAC
GTGGTCATGC AGAGCCAGCT CGACGCGCGT CTGCGTGAAG TGCAGCAAAC CATCGACAAG
CGCGGCGGCG CCCTGCCGCC CGAGCACGTG CTGAGCCAGC AGGTGCTCGA GCGTCTGATC
ATCGAGAACA TCCAGCTGCA GATCGGCGAA CGCTCCGGCA TCCGCATCAC CGACGAGGAA
CTGAACCAGG CCATGGGCAC CATCGCCCAG CGCAACGGCA TGTCGCTGGA ACAGTTCCGC
CAGGCCCTGG CGCGCGACGG GCTGTCCTAC GCCGACGCGC GTGACCAGGT ACGTCGCGAG
ATGATCATCA GCCGCGTGCG TCAGCGCCGC GTGGCCGAGC GCATCCAGGT CACCGACCAG
GAGGTGCAGA ACTTCCTCGC CTCCGATCTG GGCAAGATGC AGCTGTCGGA AGAGTTCCGC
CTGGCCAACA TCCTCATCCC GGTTTCCGAA GGCGCCTCCT CCAGCGAAAT CCAGGCTGCC
GACCGCCAGG CCCGCGAGCT GTATCAGCAG CTGCAGCAGG GCGCGGACTT CGCCCAGCTG
GCCATTTCCC GCTCGGCCAG CGAAACCGCG CTGGAAGGCG GCGAGATGGG CTGGCGCAAG
GCCGGACAGC TGCCGCCACC TTTCGACAGC ATGATCAGCC AGCTGAACCC GGGCGAGGTC
ACCGAGCCGG TGCGCACGCC GGGCGGCTTC ATCATCCTCA AGCTGATCGA GAAGCGCGGT
GGCGACACCC AGGTGCGTGA CGAAGTGCAT GTGCGCCACA TCCTGATCAA GCCCAGCGAG
ATCCGCAGCC CCGAGGAAAC CCGCCGCCTG GTGGAGCGCC TGTACCAGCG CATCGTCGCC
GGCGAGGACT TCGCCGAGCT GGCCAAGAGT TTCTCCGAGG ATCCGGGCTC GGCCCTCAAC
GGCGGCGATC TCAACTGGAT CGATCCCAAC GCCCTGGTAC CCGAGTTCCG TCAGGTGATG
AGCGAGACCG CCAGCGGCGA GCTGTCCAAA CCCTTCCAGA CCCAGTTCGG CTGGCACGTA
CTGCAGGTCA TGGGCCGCCG CGCCACCGAC AGCAGCGCGC AGTTCCGCGA GCAGCAAGCG
GCCAACCTGC TGCGCAACCG CAAGTATGAC GAAGAGCTGC AGGCCTGGCT GCGCCAGATC
CGCGACGAAG CCTACGTTGA AACCAAGCTG TAA
|
|---|
| Protein sequence | MKTKLSDRLR PLLLGAALLA ATAQAQVRPL DRVVAIVDND VVMQSQLDAR LREVQQTIDK
RGGALPPEHV LSQQVLERLI IENIQLQIGE RSGIRITDEE LNQAMGTIAQ RNGMSLEQFR
QALARDGLSY ADARDQVRRE MIISRVRQRR VAERIQVTDQ EVQNFLASDL GKMQLSEEFR
LANILIPVSE GASSSEIQAA DRQARELYQQ LQQGADFAQL AISRSASETA LEGGEMGWRK
AGQLPPPFDS MISQLNPGEV TEPVRTPGGF IILKLIEKRG GDTQVRDEVH VRHILIKPSE
IRSPEETRRL VERLYQRIVA GEDFAELAKS FSEDPGSALN GGDLNWIDPN ALVPEFRQVM
SETASGELSK PFQTQFGWHV LQVMGRRATD SSAQFREQQA ANLLRNRKYD EELQAWLRQI
RDEAYVETKL
|
|---|
| |