Gene Pmen_4010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4010 
Symbol 
ID5110233 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4384747 
End bp4387563 
Gene Length2817 bp 
Protein Length938 aa 
Translation table11 
GC content63% 
IMG OID640505273 
Productorganic solvent tolerance protein 
Protein accessionYP_001189489 
Protein GI146309024 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1452] Organic solvent tolerance protein OstA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGTAA AACACCCCGC GTTCCGCAAG AAATTCCCGC TGCTGGTTAC CGGCAGTCTT 
CTGGCCTTAC AGCCCGCGTT CAGCCTACAG TCCTTTGCCG CCGAGCAATA CGATTGCCAG
GCGTCGCCTA CGGGCGGCTG GGCCTGTGCG CCAAAGACAG CCACCAGCGC CCTGCCTCCG
CGTCCACAGC ACAGCCGTAG CGCTGTCAGC ACCACCAGCG GCTCTGCCAC TGCAACTGCC
ACCAAGCAGG AACCGGCTCC GGTGTTGGTC ACCGAGAGCA AGGGGCGCGC CCTGGCTTCG
CGCAGTCCTG ATTACAGTCA TTTGGACTGG GTCCCGCGCG ATAAGTTGAC CGCCGCTCAG
CTGGCCGAAG CAGGTCCCTA CTGCGCGGGC GCCTATATCG AGCCCCTGCG TCCGGGCATG
GATGACACCA CCCCGCTCGA CGAGTCGCCG ATGTACGTGT CGGCCAAGGC CTCGCGCTAC
GAGCAGGAAA AGCAGATCGC CACCCTGGCC GGCGACGTGG TTCTGCGCCA GTCCGGCATG
CAGGTCGAGG CCGACGAGGC CAGCCTGCAC CAGGCCGAAA ACCGCGGCGA GCTGGTCGGC
AACGTGCGCC TGCGCGACAA GGGCACGCTG GTGGTCGGCG ACCGCGCCGA GCTGCAACTC
GACAACGGCG AAGCCCGTAT CGACAACGCC GAATACGTGA TGCACCAGGC CCATGTGCGC
GGCAGCGCGC TCTATGCCAA ACGCGAAGAG ACCGCGATCA TCCGCCTCAA GGACGGCACC
TACACCCGCT GCGAGCCGGG TGACAATGCC TGGCACCTGA AGGGCAACAA CGTCACCCTG
AACCCGGCGA CCGGCTTCGG TACCGCGACC AACGTGACGC TGCGGGTCAA GGACATTCCG
GTGTTCTACA CCCCGTACAT CTATTTCCCG ATCGACGACC GTCGCCAGTC CGGCTTCCTG
CCGCCGAGCC TGGGCACGTC GAGCAGCAAC GGCTTCTCGC TGCAGACCCC CTACTACTTC
AACCTGGCGC CGAACTACGA CGCCACGCTC TACCCCACCT ACATGGCCAA GCGCGGCCTG
CTGATGGAAG GCGAATTCCG CTACCTGACC GAGAGCAGCG AAGGCCAGGT CGGCGGTGCA
TGGCTCAACG ACCAGGAAGA CGAGCGCAAG CTGCAGTCCG AATACGAAGA CCAGCGCTGG
ATGTACAGCT GGCAGCACAA ACAGGGCCTG AATTCGCGCC TGTTGGCCGA AGTCGATTAC
ACAGACATCA GCGACCCCTA CTACTTCCAG GATCTCGATA CCGACCTGGG CATCGAAACC
CAGAGTTACG TGAACCAGCG TGGCACGCTG ACCTACCGTG GCGACAGCTA CACCGCCCGC
CTGAACGTGC ATGCGTACGA ACTGGCCAAT ATCACTGACA TCACTCCGTA TGACCGTCTG
CCGCAGATTA CCCTGGATGG CAAGCTGCCG TTCAACCCGG GCGGCCTGGA CTTCACCTAT
GGCACCGAGT ACGTGCGCTT CGACCGCAAT CTGCGCTCCG GCTTCTTCGT CGACAAGGAT
GGCGTCACCG GCCGCCCGCA GGATCTCTGG TACGACGCCC GCCTCACCGG CCTGAACCGA
GCAGACGGTG AACGTCTGCA TCTGGAGCCA GGCGTAAGCC TGCCATTGAA CTGGAGCTGG
GGCTTCGTGA AACCCCAGGT CAAGTACCTG CATACTCAGT ATCAGGTGAA TCTGGACGGC
CAGGGCAAGG CAGATCTCGC CACCAACGAT CCTGAAAACC AGTGGTTCGG CGTCGACTAC
AAGGGCTCGC CCAATCGCGG CGTCGGCCTG TTCAGCCTCG ACAGTGGCCT GTACTTCGAC
CGCAACACCC AGCTGTTCGG CCGGGAGACC CGCCAGACCC TGGAACCGCG AGCCTTCTAC
CTCTACGTGC CGGAAGAGGA TCAGACCGAC ATCCCGATCT TCGACACTGG CGAGCCGACC
TTCAGCTACG CCTCGCTGTG GCGTGAGAAC CGCTTCAGCG GCAAAGACCG TATCGGCGAC
GAGAACAAGC TGTCGCTGGG CGTGACCAGC CGCTGGATCG AGCCCAACGG CTTCGAGCGC
CAGCGCTTCA GCGTCGGTCA GGCCTTCTAC TTCGAGGACC GCAAGGTACA ACTGGCAGGT
ATCGATTACC GCGGCCGCCA GGACGCGACC TCGGACGTAT CGCCTTACGC GCTGGAGTAC
CTGTATCGCT TCAACCGCGA CTGGCGCTTC TCCTCGACCT TCAACTGGGA CCCGGATCAG
CACGCCACCC GCTCGGGCAG CGCGATGTTC CATTACCAGC CGGAGGACAA CCCGAACAAG
ATCGTCAACC TGGGCTACCG CTATCGTAAC GACATCGTGC GCTACGACCG TGACAGCGGT
ACCTGGACCA CCAACCCGGA CTACGGCAAT CCGACTCTCG CTGACGGCTC GCCGAACCCC
AACTACATCA AGAATTACTA CAAGATCGAC CAGCATGACT TCTCCGTCAT CTGGCCGCTG
GCACCGCAGT GGAGCCTGAT CTCGCGCTGG CAGTACGACT ACGGCCGCAA CCGTACCCTG
GAGGCCTTCG GTGGCTTCGA GTACGACAGC TGCTGCTGGA AGCTGCGCCT GATCAACCGC
TACTGGATCG ACTACGACGA AGTCAGCCTC GACCCATCGC GCAACGACGA GCCGGACCGC
GGCATCTTCC TGCAGATCGT CCTCAAGGGC CTCGGCGGCG TTGTTGGCAA CAAGGTGGAA
ACTTTCCTCG ACCAAGGCAT TCAAGGTTAC CGTGAACGTG AAGACCAAGC TTTCTGA
 
Protein sequence
MAVKHPAFRK KFPLLVTGSL LALQPAFSLQ SFAAEQYDCQ ASPTGGWACA PKTATSALPP 
RPQHSRSAVS TTSGSATATA TKQEPAPVLV TESKGRALAS RSPDYSHLDW VPRDKLTAAQ
LAEAGPYCAG AYIEPLRPGM DDTTPLDESP MYVSAKASRY EQEKQIATLA GDVVLRQSGM
QVEADEASLH QAENRGELVG NVRLRDKGTL VVGDRAELQL DNGEARIDNA EYVMHQAHVR
GSALYAKREE TAIIRLKDGT YTRCEPGDNA WHLKGNNVTL NPATGFGTAT NVTLRVKDIP
VFYTPYIYFP IDDRRQSGFL PPSLGTSSSN GFSLQTPYYF NLAPNYDATL YPTYMAKRGL
LMEGEFRYLT ESSEGQVGGA WLNDQEDERK LQSEYEDQRW MYSWQHKQGL NSRLLAEVDY
TDISDPYYFQ DLDTDLGIET QSYVNQRGTL TYRGDSYTAR LNVHAYELAN ITDITPYDRL
PQITLDGKLP FNPGGLDFTY GTEYVRFDRN LRSGFFVDKD GVTGRPQDLW YDARLTGLNR
ADGERLHLEP GVSLPLNWSW GFVKPQVKYL HTQYQVNLDG QGKADLATND PENQWFGVDY
KGSPNRGVGL FSLDSGLYFD RNTQLFGRET RQTLEPRAFY LYVPEEDQTD IPIFDTGEPT
FSYASLWREN RFSGKDRIGD ENKLSLGVTS RWIEPNGFER QRFSVGQAFY FEDRKVQLAG
IDYRGRQDAT SDVSPYALEY LYRFNRDWRF SSTFNWDPDQ HATRSGSAMF HYQPEDNPNK
IVNLGYRYRN DIVRYDRDSG TWTTNPDYGN PTLADGSPNP NYIKNYYKID QHDFSVIWPL
APQWSLISRW QYDYGRNRTL EAFGGFEYDS CCWKLRLINR YWIDYDEVSL DPSRNDEPDR
GIFLQIVLKG LGGVVGNKVE TFLDQGIQGY REREDQAF