| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3978 |
|---|
| Symbol | |
|---|
| ID | 5110201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4357242 |
|---|
| End bp | 4359476 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640505241 |
|---|
| Product | virulence-associated E family protein |
|---|
| Protein accession | YP_001189457 |
|---|
| Protein GI | 146308992 |
|---|
| COG category | [R] General function prediction only
[S] Function unknown |
|---|
| COG ID | [COG4643] Uncharacterized protein conserved in bacteria
[COG5545] Predicted P-loop ATPase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00795636 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.108518 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACC GTCACGAGTT GCTCGACGAT GTGCTGGCCC AGCTGCAGGC CGCTGACCTT
CGCCCTAAAA CTCCGCTGGT GATCGGCAAG CGCACCCGCT GCGAGGTGGA GGGCGACAAG
GCGCCGGAGA AGACGGGCTG GTATGTGATC TATGAGCACA TGGGCTCGAA GGGCGAAACC
TTCTACTGTG GCTCGTTCGG CGATTGGCGC TCGGGCGAGA AGGGCAGCTG GCACAAGATC
AAGCCGAAGG GCGGGAAGAT CTCGGCCGAG GATCGCGCCG TGATGAGGGC GCGAGCCGAG
GAGGGCCAGC GCAGGGCGGC CGAGGCCGAG CAGAAGAAGC ACCGCACCGC CGCGCGGCGG
GCCGCTGGCA TCTGGAAGTA TCTGGAGGAA AAGGGGCACT GCGCCTACCT GGATGCCAAG
CGCGTCGGCG GCTTCGGGCT GCGTTACAAG CGGAAGTCGG GCACTGCCCT GGTGCCGATG
CGCAGCGTGA AGACGTGGGA CATTGTTGGC CTGCAGGTGC TGTACCCGGC CGTAGTGCCG
AAGCTGGGCC GGAACAAGAC CTATTGGCCC TATGGCCTGG AGAAGGAGGG CGCGGTGCAT
CTGCTCGGCC CGGAGCCAGA GCCAGGTGAC ACCATTCTGG TGTGCGAGGG GTACGCGACG
GGCGCAAGCC TGTACATGGC GACTTCGCTG ACGGTGGCGG TGTGCTTCGA CGCGGGCAAC
CTGTTGCCGG TGGCGCAGGG GTTGCGGGTG CGCTATCCGG GTCGGCCGTT GGTGTTCTGT
GCCGACGATG ACTGGAAGAC TGAGATTCAG GGCAAGCCGG TGAACGTGGG CAAGATCAAG
GCCGAGAACG CGGCGCACCT CGTCGGCGGC CGCGTTGTGT TGCCGGTGTT CGATAGCGAG
CGCGAGGACC GGTGGACGGA CTTCAACGAC CTGCACTGCG CCGAGGGGCT TGAGGCGGTG
AAGCGCCAGG TGGAGGCGGT TGTGCGGCCT GCCACTGACG CGCCCTGGCG GGAGAAGCTG
CAGTATGCGG AGAAGGGCGG GATGATCGCT CACCCGTACA ACGTGGCGTT GATCCTGGGC
AACGATGACC GCTGGGGCAA GGTGATTGCG TTCGATTCGT TCAGCTCGAA GATCCGCAAG
TTGCGCACGC CGCCGTATGG GGGAAGCGCT GGGGATTGGA GCGACCTCGA TGACATCAAG
GTGATGAACT GGCTGGCCGA GACCTACGGC TTGCGGGTGA AGACTGCGCA TGTGGTGGAG
GCGGTGAACG CGGTGGCGCA TGACAATGCG TTTCACCCGG TGCGCGAGTA TCTGGATGGG
TTGACCTGGG ATGGCACGCC GCGCCTGGAG ACGTGGCTGC AGCGGCACCT CGGCGTGGCG
GATAGCGAGT ACGCGCGGAA GGTGAGCAAG CGCTGGCCGT TGTCTGCGGT GGCTCGGGTG
TTTGAGCCGG GCTGCAAGGC GGACTCGGTG CTGATCCTCG AAGGGGCGCA GGGTGCGGGT
AAGTCCACCT CGATGTCGAT CCTGGGCGGG TTGTGGTTCA TGGATACGCC GTTCAACCTG
GGCGACAAGG ATGGCTATCA GGCGATCCGG GGTAAGTGGA TCGTGGAGCT GGGCGAGCTG
GACGCCTTCA ACAAGGCTGA GTCGACGCGG GCCAAGCAGT TTTTCTCGGC CTCGGTGGAT
ACGTACCGGG AGAGCTACGG GCGCAGGGTG CTGGATGTGC CGCGCCAGTG CGTATTCGTG
GGTACGACGA ACCAAGACGA GTACCTGAAG GACGACACTG GGAACCGCCG TTACTGGCCG
GTGATGTGCA CGAAGGTGGC ACTGGACGGC CTGCGGGCCG AGCGCGATCA ACTCTGGGCC
GAGGCGGTAG CGTGTTATCG CGCTGGGCAT CCTTGGTGGG TGGATCGGGA CGAGGCGGAA
ATCTTCGCCG CTGAGCAGGA CCAGCGCTAT CAGGCGGATA TGTGGGAGGA GCCCATCATC
GCCTATCTGA GCCAGCCGAC TGCCGGCGAG AGCGTGACGG GGGCGCAGAT CCTTGAGAAG
GCGTTGAACA TCGACCCGAG CCATTGGGGA AAGCCGGAGC AGATGCGGGT GGGCAAGATC
ATGCATCGGC TCAAGTGGCC ACGGCGGCGG CAGAGCAAGC CGGACAGGCC GACAGGTTCG
CGCGGGTACG TGTACGTGCG GCCGCCCGAG TGGAAGAAGG GCGCGAAGCC CGAGCAGAGG
GAGGCCGCAT TTTGA
|
|---|
| Protein sequence | MTDRHELLDD VLAQLQAADL RPKTPLVIGK RTRCEVEGDK APEKTGWYVI YEHMGSKGET
FYCGSFGDWR SGEKGSWHKI KPKGGKISAE DRAVMRARAE EGQRRAAEAE QKKHRTAARR
AAGIWKYLEE KGHCAYLDAK RVGGFGLRYK RKSGTALVPM RSVKTWDIVG LQVLYPAVVP
KLGRNKTYWP YGLEKEGAVH LLGPEPEPGD TILVCEGYAT GASLYMATSL TVAVCFDAGN
LLPVAQGLRV RYPGRPLVFC ADDDWKTEIQ GKPVNVGKIK AENAAHLVGG RVVLPVFDSE
REDRWTDFND LHCAEGLEAV KRQVEAVVRP ATDAPWREKL QYAEKGGMIA HPYNVALILG
NDDRWGKVIA FDSFSSKIRK LRTPPYGGSA GDWSDLDDIK VMNWLAETYG LRVKTAHVVE
AVNAVAHDNA FHPVREYLDG LTWDGTPRLE TWLQRHLGVA DSEYARKVSK RWPLSAVARV
FEPGCKADSV LILEGAQGAG KSTSMSILGG LWFMDTPFNL GDKDGYQAIR GKWIVELGEL
DAFNKAESTR AKQFFSASVD TYRESYGRRV LDVPRQCVFV GTTNQDEYLK DDTGNRRYWP
VMCTKVALDG LRAERDQLWA EAVACYRAGH PWWVDRDEAE IFAAEQDQRY QADMWEEPII
AYLSQPTAGE SVTGAQILEK ALNIDPSHWG KPEQMRVGKI MHRLKWPRRR QSKPDRPTGS
RGYVYVRPPE WKKGAKPEQR EAAF
|
|---|
| |