| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3910 |
|---|
| Symbol | rpsJ |
|---|
| ID | 5106444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4286649 |
|---|
| End bp | 4286960 |
|---|
| Gene Length | 312 bp |
|---|
| Protein Length | 103 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640505164 |
|---|
| Product | 30S ribosomal protein S10 |
|---|
| Protein accession | YP_001189389 |
|---|
| Protein GI | 146308924 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0051] Ribosomal protein S10 |
|---|
| TIGRFAM ID | [TIGR01049] ribosomal protein S10, bacterial/organelle |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00375138 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACC AACAAATCCG TATTCGGTTG AAGGCTTTTG ACCATCGCCT GATCGATCAA
TCTACCCAGG AAATCGTGGA AACCGCGAAA CGTACTGGTG CTCAGGTGCG TGGTCCGATT
CCTCTGCCTA CTCGTAAGGA GCGGTACACC GTTCTGATTT CTCCGCACGT CAACAAGGAC
GCGCGTGATC AGTACGAAAT CCGCACTCAT AAGCGTGTTC TGGACATCGT CCAGCCGACG
GATAAAACCG TTGACGCGCT GATGAAGCTC GACCTTGCGG CAGGCGTGGA AGTGCAGATC
AGCCTCGGCT AA
|
|---|
| Protein sequence | MQNQQIRIRL KAFDHRLIDQ STQEIVETAK RTGAQVRGPI PLPTRKERYT VLISPHVNKD
ARDQYEIRTH KRVLDIVQPT DKTVDALMKL DLAAGVEVQI SLG
|
|---|
| |