Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3906 |
Symbol | rplB |
ID | 5106440 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4284184 |
End bp | 4285008 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640505160 |
Product | 50S ribosomal protein L2 |
Protein accession | YP_001189385 |
Protein GI | 146308920 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0090] Ribosomal protein L2 |
TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.289546 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAATCG TTAAATGCAA ACCGACTTCC GCTGGCCGCC GTTTTGTGGT CAAGGTGGTC AATCAGGAGC TGCACAAAGG CGCTCCGTAC GCTCCGCTGC TCGAGAAGAA GTCGAAGTCC GGTGGTCGTA ACAACAACGG CCGTATCACC ACCCGTCATA TCGGTGGTGG CCACAAGCAG CATTACCGTC TGGTCGACTT CCGTCGCAAC GACAAGGATG GCATCCCTGC CACCGTCGAG CGCGTGGAAT ACGATCCGAA CCGTACTGCT CACATCGCTC TGCTGAAGTA TGCCGACGGT GAGCGTCGCT ACATCATCGC CCCGAAAGGC GTTGTAGCTG GCGATCAGCT GGTAGCCGGC AACATGGCGC CGATCAAGCC GGGCAACAGC CTGCAGCTGC GCAACATTCC GGTAGGTTCG ACCGTTCACG GTATCGAGCT GAAGCCGGGC AAAGGCGCGC AGATCGCTCG TTCCGCTGGT GCTTCCGCTC AGCTGATCGC GCGTGAAGGT GCTTATGTGA CTCTGCGTCT GCGCTCCGGC GAAATGCGCA AAGTCCTGGC TGAGTGCCGT GCGACCCTGG GCGAAGTCTC GAACTCCGAG CACAGCCTGC GTTCGCTGGG TAAGGCTGGT GCCAAGCGCT GGCGTGGCGT TCGTCCGACC GTTCGTGGTG TTGCCATGAA CCCGGTTGAT CACCCGCACG GTGGTGGTGA AGGTCGTACC TCCGGTGGTC GTCATCCGGT GTCGCCGTGG GGCTTCCCGA CCAAGGGCGC GAAGACCCGT GCTAACAAGC GCACCGACAA CATGATCGTC CGTCGTCGCA AGTAA
|
Protein sequence | MAIVKCKPTS AGRRFVVKVV NQELHKGAPY APLLEKKSKS GGRNNNGRIT TRHIGGGHKQ HYRLVDFRRN DKDGIPATVE RVEYDPNRTA HIALLKYADG ERRYIIAPKG VVAGDQLVAG NMAPIKPGNS LQLRNIPVGS TVHGIELKPG KGAQIARSAG ASAQLIAREG AYVTLRLRSG EMRKVLAECR ATLGEVSNSE HSLRSLGKAG AKRWRGVRPT VRGVAMNPVD HPHGGGEGRT SGGRHPVSPW GFPTKGAKTR ANKRTDNMIV RRRK
|
| |