| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3894 |
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| Symbol | rplF |
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| ID | 5106428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4279233 |
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| End bp | 4279766 |
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| Gene Length | 534 bp |
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| Protein Length | 177 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640505148 |
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| Product | 50S ribosomal protein L6 |
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| Protein accession | YP_001189373 |
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| Protein GI | 146308908 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0097] Ribosomal protein L6P/L9E |
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| TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000000149542 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCGCG TTGCTAAGAA CCCCGTTGTG CTGCCTGCCG GTGTCGAGGT CAAACTCGCC
GGCCAGCAGC TTTCGGTCAA GGGTGCCAAG GGCGCTCTGG AACTGAACGT TCACTCTTCC
GTAGAAGTGA TCCAGGAAGG CTCCGAACTG CGTTTCGCCG CTCGTAACGG CGATCAGCAG
AACAAGGCCA TGGCCGGCAC CACTCGTGCT CTGGTCAACA ACATGGTCAT CGGCGTCAGC
CAAGGCTTCG AGCGCAAGCT GCAACTGGTC GGCGTAGGCT ACAAGGCCCA GGCCAAAGGT
CAGGTGCTGA ACCTCGCGCT GGGCTTCTCT CACCCGATCG ACTACGAACT GCCGGCAGGC
GTCGTGGCTG AAACCCCTAA CCAGACCGAG ATCCTGATCA AGGGTATCGA CAAGCAACTG
GTGGGTCAGG TGGCTGCGGA GATCCGTGAC TTCCGTCGTC CTGAGCCTTA CAAGGGCAAA
GGCGTTCGTT ACGCGGATGA AGTCGTCCGT CGTAAAGAAG CCAAGAAGAA GTAA
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| Protein sequence | MSRVAKNPVV LPAGVEVKLA GQQLSVKGAK GALELNVHSS VEVIQEGSEL RFAARNGDQQ
NKAMAGTTRA LVNNMVIGVS QGFERKLQLV GVGYKAQAKG QVLNLALGFS HPIDYELPAG
VVAETPNQTE ILIKGIDKQL VGQVAAEIRD FRRPEPYKGK GVRYADEVVR RKEAKKK
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