| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3889 |
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| Symbol | secY |
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| ID | 5106423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4276422 |
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| End bp | 4277750 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640505143 |
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| Product | preprotein translocase subunit SecY |
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| Protein accession | YP_001189368 |
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| Protein GI | 146308903 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.000822061 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAGC AAGGTGCTCT CTCAGCGCTG GCAGGTGGCG GGTTGTCCGA ACTCTGGGCT
CGTTTGCGCT TCCTGTTCAT GGCGATCATC GTCTACCGGA TAGGTGCGCA CATCCCGGTT
CCTGGCATCA ACCCAGACCG ACTGGCGGAT CTGTTCCGGC AGAATGAGGG GACCATTCTT
AGCTTGTTCA ACATGTTTTC CGGCGGCGCG CTGGAGCGGA TGAGCATCTT TGCACTGGGG
ATCATGCCGT ACATCTCGGC ATCGATCATC ATGCAGCTGA TGACCGCCGT CAGCCCGCAG
CTGGAGCAGT TGAAGAAGGA AGGTGAAGCT GGCCGTCGCA AGATCAGCCA GTACACCCGC
TACGGCACTC TCGTCCTGGC GTTCGTTCAG GCCATCGGTA TGTCCGTTGG ACTGGCTAGT
CAGGGCGTGG CGTTCTCGGT CGATTTCGGC TTCCATTTCG TGGCGATCAC CACTTTTGTG
GCGGGCGCGA TGTTCATGAT GTGGCTGGGC GAGCAGATCA CCGAGCGCGG TGTCGGCAAC
GGTATCTCGA TGCTGATCTT TGCAGGCATC GTGGCCGGTC TGCCGTCGGC GATCGGGCAG
TCTTTCGAGT CTGCTCGTCA GGGCGATATC AACATCTTCG CTCTGATCGC CATCGGCCTG
CTGGCAGTAG CGATCATCGG TTTCGTGGTG TTCATCGAGC GTGGTCAGCG TCGCATTGCG
GTGCACTACG CCAAGCGTCA GCAGGGCCGC AAGGTCTTCG CTGCGCAGAC CAGCCACCTG
CCGTTGAAGG TGAACATGGC GGGCGTAATC CCGGCCATTT TCGCCAGCAG CCTTCTGCTG
TTCCCGGCCT CGCTGGGTGC CTGGTTCGGT CAGTCCGAGG GTTTGGGCTG GCTGCAGGAC
ATTTCGCAGG CTATCGCTCC TGGTCAGCCG TTGAACATTC TGCTGTTTAG TGCAGGGATC
ATTTTCTTCT GCTTCTTCTA CACGGCACTG ATGTTCAACC CGAAAGACGT AGCGGAAAAC
CTGAAGAAGT CCGGTGCCTT TATTCCGGGC ATTCGTCCGG GCGAGCAGTC GGCACGCTAT
ATCGATGGCG TTCTGACCCG CTTGACCATG TTCGGTGCTC TGTACATGAC GGCCGTGTGC
CTGCTGCCCC AGTTCCTGGT GGTTGCGGCC AACGTTCCGT TCTACCTTGG CGGGACCTCG
TTGCTGATCG TGGTCGTGGT TGTCATGGAC TTCATGTCCC AAGTGCAATC GCACCTCGTG
TCTCACCAGT ACGATTCCCT GATGAAGAAA GCCAACCTGA AGGGCTATGG CAGCGGCATG
CTCCGCTGA
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| Protein sequence | MAKQGALSAL AGGGLSELWA RLRFLFMAII VYRIGAHIPV PGINPDRLAD LFRQNEGTIL
SLFNMFSGGA LERMSIFALG IMPYISASII MQLMTAVSPQ LEQLKKEGEA GRRKISQYTR
YGTLVLAFVQ AIGMSVGLAS QGVAFSVDFG FHFVAITTFV AGAMFMMWLG EQITERGVGN
GISMLIFAGI VAGLPSAIGQ SFESARQGDI NIFALIAIGL LAVAIIGFVV FIERGQRRIA
VHYAKRQQGR KVFAAQTSHL PLKVNMAGVI PAIFASSLLL FPASLGAWFG QSEGLGWLQD
ISQAIAPGQP LNILLFSAGI IFFCFFYTAL MFNPKDVAEN LKKSGAFIPG IRPGEQSARY
IDGVLTRLTM FGALYMTAVC LLPQFLVVAA NVPFYLGGTS LLIVVVVVMD FMSQVQSHLV
SHQYDSLMKK ANLKGYGSGM LR
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