Gene Pmen_3881 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3881 
Symbol 
ID5106415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4269361 
End bp4271511 
Gene Length2151 bp 
Protein Length716 aa 
Translation table11 
GC content64% 
IMG OID640505135 
Productcatalase/peroxidase HPI 
Protein accessionYP_001189360 
Protein GI146308895 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0376] Catalase (peroxidase I) 
TIGRFAM ID[TIGR00198] catalase/peroxidase HPI 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.653665 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAACC AAGGTAAATG TCCGTTCAAT CACGTCGCGG GGGGCGGCAC GACCAACAAG 
GATTGGTGGC CGAATCAGCT GCGTGTGGAC CTGCTGAACC AGCACTCCGA CCGATCCAAC
CCGCTGGGCG AGAAGTTCAA CTACGCCGAA GCATTCAAGA AGCTCGACTA CAAGGCGCTG
AAGGCCGATC TGGTCAGGCT GATGACCGAC AGCCAGGATT GGTGGCCCGC CGACTTCGGC
CATTACGGCC CGCAGTTCAT CCGCATGGCC TGGCACTCCG CCGGCACCTA TCGCACTACC
GACGGCCGCG GCGGCGGTGG CCGTGGTCAG CAGCGTTTCG CCCCGCTGAA CTCCTGGCCG
GACAACGTCA ACATCGACAA GTCGCGTCGC CTGCTGTGGC CTATCAAGCA GAAGTACGGC
CAGTCCATTT CCTGGGCCGA CCTGTACATC CTCGCCGGCA ACGTCGCGCT GGAGTCCATG
GGATTCCGCA CCTTCGGCTT CGGTGCCGGT CGCGAGGACG TGTGGGAACC GGATCAGGAC
GTCAACTGGG GGGCAGAGGT CGCCTGGCTG GGCGTCGATC CCAAGCGCGT CAACGATGAG
CGTGAGCTGA CCGCGCCGTT TGGCGCCACG CACATGGGGC TGATCTACGT GAACCCCGAG
GGCCCCAACG CCAGTGGCGA TTACCTGGCC GCGGCCAAGG ATATTCGCGC CACCTTCTAT
CGCATGGCCA TGAACGATGA AGAGATCGTC GCGCTGATCG CCGGCGGTCA CACCTTCGGC
AAGGCCCACG GCGCTGCACC CGAGTCACAC AAGGGCCCGG AGCCGGAAGG CGCGCCGATC
GAAGCGCAGG GCCTGGGCTG GACCAGCAAC TTCGGCAGCG GTTTCGGCAA GGACACCGTT
TCCAGCGGTC TGGAGGTGAC CTGGACGAAG ACGCCGGCAC TGTGGAGCAA CAACTTCTTC
GAGAACCTGT TCAAGTTCGA ATGGGAGCTG ACCAAGTCGC CTGCCGGGGC CAAGCAGTGG
GTGGCCAAGG ATGCGCCGGA GATCATCCCT GACGCGCATG TGCCGGGCAA ATTCCACAAG
CCGACCATGC TCACCACCGA CCTCACCCTG CGTTTCGATC CCGAGTTCGG CAAGATTTCC
AAGCGCTTCT ACGAAGATCC GCAGGCCTTC GCCGATGCCT TCGCGCGCGC CTGGTACAAG
CTGACGCACC GCGACATGGG ACCGAAGGCC CGCTACCTCG GCCCGGAAGT GCCGAAAGAG
GATCTGATCT GGCAAGACCC GCTGCCGGCT GCCATCCATA ACCCGAGCGC TGCCGATATC
GCCGATCTGA AGGCCAGGAT CGCTGCATCC GGGCTATCGG TCGGTGACCT GGTCTCCGTG
GCCTGGGCTT CGGCCTCCAC CTTCCGCGGT GGCGACAAGC GCGGCGGGGC CAACGGCGCG
CGTCTGGCGC TGGCGCCGCA GAAGGACTGG GAAGCCAACC AGCGGGCGAT CAAGGTGCTG
CCGAAGCTGG TGGAAATCCA GCAGGCTTCC GGCAAGGCGT CGCTGGCCGA TGTGATCGTG
CTGGCCGGTA ACGTCGGTGT GGAGCAGGCG GCCAAGGCTG CCGGCGTGGC GGTGGACGTG
CCCTTCGCTG CGGGCCGCGT CGATGCGCGT CAGGATCAGA CCGACGTGGA GTCCTTCGAT
GTGCTGGAGT CGGCCGCCGA TGGCTTCCGC AACTACAGCA AGGGCAACCT GGGCGTACCC
ACCGAGACCA TGCTGGTCGA CAAGGCGCAG CTGCTGACGC TGACCGCGCC GGAGCTGACC
GCACTGGTCG GTGGCCTGCG CGTGCTGGGC GCCAACTACG ATGGCAGCCA GCATGGCGTG
TTCACCGACA AGGTGGGCGT GCTGTCGAAC GACTTCTTCG TCAACCTGCT CGATATGAAC
ACCGTCTGGA AAGCGGTGGA TGACAGCAAC GAAGTGTTCG AGGGCAGGGG GCGCAAGGAC
GGTCAGGTGA AGTACACCGC CACCCGTAAC GACCTGGTGT TCGGCTCCAA CTCCATCCTG
CGGGCCTATG CCGAGGTGTA CGCCAGCAGC GACGGCAAGG AGAAACTGGT CAAGGATTTC
GTCGCCGCCT GGACCAAGGT GATGAACCTG GATCGCTTCG ATCTGGCCTG A
 
Protein sequence
MSNQGKCPFN HVAGGGTTNK DWWPNQLRVD LLNQHSDRSN PLGEKFNYAE AFKKLDYKAL 
KADLVRLMTD SQDWWPADFG HYGPQFIRMA WHSAGTYRTT DGRGGGGRGQ QRFAPLNSWP
DNVNIDKSRR LLWPIKQKYG QSISWADLYI LAGNVALESM GFRTFGFGAG REDVWEPDQD
VNWGAEVAWL GVDPKRVNDE RELTAPFGAT HMGLIYVNPE GPNASGDYLA AAKDIRATFY
RMAMNDEEIV ALIAGGHTFG KAHGAAPESH KGPEPEGAPI EAQGLGWTSN FGSGFGKDTV
SSGLEVTWTK TPALWSNNFF ENLFKFEWEL TKSPAGAKQW VAKDAPEIIP DAHVPGKFHK
PTMLTTDLTL RFDPEFGKIS KRFYEDPQAF ADAFARAWYK LTHRDMGPKA RYLGPEVPKE
DLIWQDPLPA AIHNPSAADI ADLKARIAAS GLSVGDLVSV AWASASTFRG GDKRGGANGA
RLALAPQKDW EANQRAIKVL PKLVEIQQAS GKASLADVIV LAGNVGVEQA AKAAGVAVDV
PFAAGRVDAR QDQTDVESFD VLESAADGFR NYSKGNLGVP TETMLVDKAQ LLTLTAPELT
ALVGGLRVLG ANYDGSQHGV FTDKVGVLSN DFFVNLLDMN TVWKAVDDSN EVFEGRGRKD
GQVKYTATRN DLVFGSNSIL RAYAEVYASS DGKEKLVKDF VAAWTKVMNL DRFDLA