Gene Pmen_3869 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3869 
Symbol 
ID5106403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4256383 
End bp4256793 
Gene Length411 bp 
Protein Length136 aa 
Translation table11 
GC content63% 
IMG OID640505123 
Productbiopolymer transport protein ExbD/TolR 
Protein accessionYP_001189348 
Protein GI146308883 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAATGC GTCGTCACCA CCAGCAGGAC GAAGACACCG GCATCGACCT CACGCCGATG 
CTCGACGTGG TCTTCATCAT GCTGATCTTC TTCATCGTCA CCAGCTCGTT CATTCGCGAG
TCCGGGGTCG AAGTGCAGCG CCCGCAGGCG GAAACCGCCA ATCCGCAGGA CAAGGGCAAC
ATCCTCATCG CCGTCACCGC CGACGGGCAG ATCTGGATGG ACAAGCAGTC GGTGGACATC
CGCAGCGTGC GTGCCCATGT CGAGCGCATG CGCGTCGATC AGCCTGAAGG CGCCGTGGTG
GTTCAGGCCG ACAAGGATGC GCGTACCGGC CTGGTCGTCC AGGTGATGGA TCAGGCGCGT
CTGGCCGGTG TGCAGGATGT CGCGCTGGCT GCCGGTAGCG GAGTCAACTG A
 
Protein sequence
MRMRRHHQQD EDTGIDLTPM LDVVFIMLIF FIVTSSFIRE SGVEVQRPQA ETANPQDKGN 
ILIAVTADGQ IWMDKQSVDI RSVRAHVERM RVDQPEGAVV VQADKDARTG LVVQVMDQAR
LAGVQDVALA AGSGVN