| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3858 |
|---|
| Symbol | nrdR |
|---|
| ID | 5106088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4247946 |
|---|
| End bp | 4248413 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640505112 |
|---|
| Product | transcriptional regulator NrdR |
|---|
| Protein accession | YP_001189337 |
|---|
| Protein GI | 146308872 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
|---|
| TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTGTC CCTTCTGCGC CGCCAACGAC ACCAAGGTCA TCGATTCCCG TCTGGTTGCC
GAGGGCGATC AGGTACGCCG CCGCCGCGAG TGCGTGGCCT GCGGTGAACG GTTCACCACC
TTCGAAACCG CCGAGCTGGT GATGCCGCGT CTGATCAAGC AGGACGGCAG CCGTCAGCCC
TTCGACGAGG AGAAGCTGCG CGCCGGCATG CAGCGCGCGC TGGAGAAGCG CCCGGTGAGC
GTCGAACGTC TGGAAGAGGC CATCGCCCGC ATCAAGCAGC AACTGCGCGC CACCGGTGAG
CGCGAGGTGA AGTCGCTGGT GCTCGGTGAG CTGGTGATGA CCGAGCTGAG CAAGCTCGAC
GAGGTGGCCT ACATCCGTTT CGCCTCGGTG TACCGACGCT TCCAGGACCT CAACGAGTTC
CGCGAAGAGA TCGAGCGCCT TGCCCGCGAG CCGTCGAAAA GCCGATGA
|
|---|
| Protein sequence | MHCPFCAAND TKVIDSRLVA EGDQVRRRRE CVACGERFTT FETAELVMPR LIKQDGSRQP
FDEEKLRAGM QRALEKRPVS VERLEEAIAR IKQQLRATGE REVKSLVLGE LVMTELSKLD
EVAYIRFASV YRRFQDLNEF REEIERLARE PSKSR
|
|---|
| |