| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3844 |
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| Symbol | |
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| ID | 5106074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4234350 |
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| End bp | 4236245 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640505098 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001189323 |
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| Protein GI | 146308858 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACCA CTTTCCACGA GATCCCCCGC GAGCGCCCGT TGACGCCGCT GCTCGACAGC
GCCAACACGC CCGACGAACT GCGCCGCCTG GCCGAAGCGG ACCTGGAAAC CCTCGCCGAC
GAACTGCGCC AGTACCTGCT CTACAGCGTC GGCCAGAGCG GCGGGCACTT CGGTGCCGGC
CTCGGCGTCA TCGAGCTGAC CATCGCCCTG CACTACGTCT TCGACACCCC CGATGACCGC
CTGGTGTGGG ACGTCGGCCA CCAGGCCTAC CCGCACAAGA TCCTCACCGG CCGTCGCGAG
CGCATGGGCA GCCTGCGCCA GAAGGACGGC CTGGCCGCCT TCCCGCGCCG CAGCGAGAGC
GAATACGACA CCTTCGGCGT CGGTCACTCC AGCACCAGCA TCAGCGCCGC CCTGGGCATG
GCCATCGCCG CCCGCCTGAA AGGCGAGAAG CGCAAGAGCG TGGCGGTGAT CGGCGACGGC
GCCCTGACCG CCGGCATGGC CTTCGAGGCG CTCAACCACG CCACCGATGT TGGCGCCAAC
ATGCTGGTGA TCCTCAACGA CAACGACATG TCGATCTCCA AGAATGTCGG CGGCCTGTCC
AACTACCTGG CCAAGATCAT CTCCAGCCGC ACCTACGCCA GCATGCGCGA GGGCAGCAAG
AAGATCCTTT CGCGCCTGCC CGGCGCCTGG GAGATCGCGC GCAAGGTCGA GGAACATGCC
AAGGGCATGC TGGTACCCGG CACCCTGTTC GAGGAGCTGG GCTGGAACTA CGTCGGCCCC
ATCGACGGCC ACGACCTGCC CACCCTGCTC GCCACCCTGC GCAATATGCG CGACCTCGAC
GGCCCGCAGT TCCTCCATGT GGTGACCAAG AAGGGCAAGG GCTTCGCCCC GGCCGAGGCC
GACCCGATCG GCTATCACGC CATCACCAAG CTCGAGCCGG TCACCCCCAG CGCGGTGCCC
AGGAAACCGA GCGGCCCGAA ATACTCCAAC GTGTTCGGTC AGTGGCTGTG CGACATGGCC
GCGGCAGATC AGCGCCTGGT CGGCATCACC CCGGCGATGA AGGAAGGCTC GGATCTGGTG
GCCTTCGCCG AGCGCTTCCC CGAGCGCTAC TTCGACGTCG CCATCGCCGA GCAGCACGCC
GTGACCCTGG CCGCCGGCAT GGCCTGCGAC GGCGTCAAGC CGGTGGTGGC GATCTATTCC
ACCTTCCTCC AGCGCGCCTA TGACCAGCTG ATCCACGACG TCGCGGTGCA GAATCTCGAT
GTGCTGTTCG CCATCGACCG CGCCGGTCTG GTCGGCGAAG ACGGCCCGAC CCATGCCGGC
AGCTTCGATA TCTCCTACCT GCGCTGCATC CCCGGCATGC TGGTGATGAC CCCCAGCGAC
GAGAACGAAC TGCGCCGCAT GCTCACCACC GGCTACCTGT TCGATGGCCC GGCCGCGGTG
CGCTACCCGC GCGGCAGCGG CCCCAATGCG CCGCTCGACG CCGGGCTGGA GCTGCTAGAG
ATCGGCAAGG CCATAGTGCG ACGCCAGGGC AAGGGCGCAG CCCTGCTGGT ATTCGGCGTG
CAACTGGCCG AAGCGCTGCA GGTCGGCGAA GCGCTGAACG CCACCGTGGT CGACATGCGC
TTCGTCAAAC CATTGGACGA GGCCCTGCTG CGCGAGCTGG CCGGCAGCCA CGAGCTGCTG
GTGACCATCG AAGAGAACGC CGTCATGGGC GGGGCCGGCA GCGCGGTCAG CGAGTTCCTC
GCCGCGCAGA ACATCATCAA GCCGCTGCTG CATCTGGGCC TGCCCGATTA CTACGTCGAG
CACGCCAAGC CGGCGCAGAT GCTCGCAGAA TGCGGCCTTG ATCAGGCCGG CATCGAACGC
GCGGTGCGCG AACGCCTCGA CCAGCTGCGG GCCTGA
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| Protein sequence | MPTTFHEIPR ERPLTPLLDS ANTPDELRRL AEADLETLAD ELRQYLLYSV GQSGGHFGAG
LGVIELTIAL HYVFDTPDDR LVWDVGHQAY PHKILTGRRE RMGSLRQKDG LAAFPRRSES
EYDTFGVGHS STSISAALGM AIAARLKGEK RKSVAVIGDG ALTAGMAFEA LNHATDVGAN
MLVILNDNDM SISKNVGGLS NYLAKIISSR TYASMREGSK KILSRLPGAW EIARKVEEHA
KGMLVPGTLF EELGWNYVGP IDGHDLPTLL ATLRNMRDLD GPQFLHVVTK KGKGFAPAEA
DPIGYHAITK LEPVTPSAVP RKPSGPKYSN VFGQWLCDMA AADQRLVGIT PAMKEGSDLV
AFAERFPERY FDVAIAEQHA VTLAAGMACD GVKPVVAIYS TFLQRAYDQL IHDVAVQNLD
VLFAIDRAGL VGEDGPTHAG SFDISYLRCI PGMLVMTPSD ENELRRMLTT GYLFDGPAAV
RYPRGSGPNA PLDAGLELLE IGKAIVRRQG KGAALLVFGV QLAEALQVGE ALNATVVDMR
FVKPLDEALL RELAGSHELL VTIEENAVMG GAGSAVSEFL AAQNIIKPLL HLGLPDYYVE
HAKPAQMLAE CGLDQAGIER AVRERLDQLR A
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