| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3842 |
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| Symbol | |
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| ID | 5106072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4230034 |
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| End bp | 4233306 |
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| Gene Length | 3273 bp |
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| Protein Length | 1090 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640505096 |
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| Product | pyruvate carboxylase., propionyl-CoA carboxylase |
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| Protein accession | YP_001189321 |
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| Protein GI | 146308856 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG1038] Pyruvate carboxylase
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit
[COG4799] Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.735507 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTTTT CCGCCCTGCT GATCGCCAAC CGCGGCGAGA TCGCCATCCG CATCGCCCAT
GCCTGCGCCG ACCTCGGTAT CCGCAGCGTG GCGGTGTACG CCGAGGACGA CAGCGCCTGC
CTGCACACGC GCAAGGCCGA CCTGGCCGTC GCGCTGGCTG GACGCGGCCC GGCGGCCTAT
CTGGATATGG ATCAACTCAT TGCCATCGCC CACGAGCAGG GCTGTGCGGC CATCCATCCC
GGCTACGGTT TTCTCGCCGA GAACGCCGAG TTCGCCCGCC GCTGCCAGGC CGCCGGGCTG
ACCTTCGTCG GCCCGACGCC GGAAACCCTG CAACTGTTCG GCGACAAGGC CGCCGCCCGC
GCCCTGGCCG AACGCTGCGC AGTGCCGCTG GTACCGGGTC TCAACCAGTC GGTGACGCTG
GAGCAGGCCA CCGCCTTTCT CGCCGAGCAC GGCAGCGTGA TGCTCAAGGC CCTGGCCGGC
GGCGGCGGGC GCGGCATGCG TGCAGTGGAG GATGCGGCGC AACTGGCCGA GGCCTTCGCC
CGCTGCGCCT CCGAGGCCCA GGGCGCCTTC GGCAGCGGCG CACTGTACGT GGAAAAGCGC
GTGCGCCGCG CCCGGCATAT CGAAGTGCAG GTGCTCGGCG ACGGCAGCGG CGCGGTCAGT
CACCTGTGGG AGCGCGACTG CAGCCTGCAG CGCCGTCACC AGAAGCTGGT GGAGATCGCC
CCCAGCCCCG ATCTTGACGC CGCCACCCGC GACGCGATCA TCGCCAACGC CATGCGCCTG
GCCGCCGAGG TGCAGTATCG CGGCATCGGC ACCTTCGAAT TCCTGCTCGA CCTCGACCAG
CCCGGGCGCT TCTACTTCAT GGAGGCCAAC CCGCGCGTGC AGGTGGAGCA CACCGTCACC
GAGCAGGTCA CCGGCGTCGA TCTGCTGCAC ACGCAACTGC AACTGGCCGC CGGCAGCAGC
CTGGCCGAGC TGAATCTGCT CAACCCGCCC GCGCCAAAGG GCTACGCCGT ACAGCTGCGT
CTGAATCTGG AAACCCTGCT CGCCGATGGC ACGGCGCGCC CGGCCAGCGG CGTGCTCGGC
GCCTACCAGC CGCCCAGCGG CCCAGGCCTG CGTGTGGATG GCTGCGGCTA TGCCGGTTAT
GCCGTGAGCC CGGCCTACGA TTCGCTGATC GCCAAGCTGA TCGCCAGCGC CAGCGACTAC
CCCGGCGCTC TGCGCCGCGC CTACCGGGCA CTGTGCGAGT TCCGCCTCGA AGGCGTGGCG
AGCAACCTGC ACCTGCTGCA GAACCTGCTG CAGCGCGACG AGGTGATCGC CAATCAGGTC
GACACCAGCT ATGTCGAGCG TCACCTGGGC GAGCTGCTGG CCCCTTGCGA GCAGGCCCAC
CCGCACCGTT ACTTCGCCAG CGACACATCT GCGCAAAGCG CCAGAGCCAG CCTCGACGCC
CCGCCCGGCA CCCTGGCGCT GAATGCGCCC AGCGCTGGCG TGCTGGTCAG CCTGGCGGTG
GCCGAGGGCG ACGCCGTGGC CACCGGTCAG CGCATCGCCG TGCTGGAGGC GATGAAGATG
GAATTCGAGG TCAAGGCCGA GCACAGCGGC ATCGTCCGTG CACTGGCCGT GGCACCCGGT
GAGGCCGTCG GCGAGGGCCA GGCGCTGGCG TATCTGGAAC CGGCCGAAGT GGATGGTCTG
GACAGTCATG GCGAGCAGGC GGTCGACCTG GCGCATATCC GCGCCGACCT GGCCGAAGTG
CTCGAACGCC ACGCACGCCT GACCGACGAG TGCCGTCCCG AAGCTGTGGC GAAAAGGCGC
AAGACCGGCC AACGCACGGT TCGGGAGAAT CTGCAGGATC TGCTCGATGA CGGCAGCTTT
ATCGAATACG GCGCCATGGC CCTGGCCGCC CAGCGCCGTC GCCGTTCGCC CGAGGAACTG
CTGGAGCTGA GCCCGGCCGA CGGTCTGGTC GCCGGTATCG GCACGGTGAA CGCCGCGCGC
TTCGGCAGCG AGGCCGCGCG CTGCATGGCC GTCGCCTACG ACTACACGGT ATTCGCCGGC
ACCCAGGGGG TGATGAACCA CAAGAAGACC GACCGCATGC TGGCCCTGGC CGAGCAGTGG
CGCCTGCCGG TGGTGCTGTT CGCCGAAGGC GGTGGCGGCC GCCCGGGGGA TACCGACTTC
GTTGGCGTGG CCGGGCTGGA CTGCCACACC TTCGTCGCCA TGGCCAAACT CTCCGGCCTG
GTACCGACGG TGGGCGTGGT CTCCGGCCGC TGCTTCGCCG GCAACGCGGC GCTGCTCGGC
TGCTGCGACG TGATCATCGC CACCCGCAAT GCCAGCATCG GTATGGCCGG CCCGGCGATG
ATCGAAGGCG GCGGCCTGGG CAGTTTCACC CCCGAGCAGG TCGGCCCGAC CAGCGTGCAG
GGCCCCAACG GCGTGATTGA CGTGCTGGTG GAGGACGAAG CCGCGGCGGT CGCCGTGGCC
AAGCAGTACC TGAGCTATTT CCAGGGCCCG GTGAACGACT GGCAGTGCAG CGATCCGCGC
GAGCTGCGCC AGGTGATCCC GGAAAACCGC CTGCGCGTGT ACGACATCCG CCAGGTGATC
GAACTGCTGG CAGACGACGG CAGCGTGCTG GAGCTGCGCC GCCAGTTCGC CCCCGGTCTG
ATCACCGCGC TGATCCGCAT CGAGGGCAAG TCCTTCGGCC TGATCGCCAA CAACCCCGCG
CACCTGGGTG GCGCCATCGA TGCCGTGGCC GGCGACAAGG CCGCGCGCTT TCTGCAACTG
TGCGAGGCCC ATGACCTGCC CATCGTCTCG CTGTGCGACA CCCCCGGCTT CATGGTCGGC
CCGGAAGCGG AGAAACAGGC CACGGTGCGC CACGTCTCGC GCCTGTTCGT CACCGCCGCC
AGCCTCACGG TGCCCTTCTT CACCCTGGTG CTGCGCAAGG GCTACGGCCT CGGCGCCCAG
GCCATGGCCG CCGGCAGCTT CCATTCGCCG CTGTTCACCG CCGCCTGGCC CAGTGGCGAA
TTCGGCGCCA TGGGCCTCGA AGGCGCGGTG CGCCTGGGTT TTGCCAAGGA GCTGGCAGCT
CAGCCGGACG AGGCCGCGCG TCAGGCCCTG TTCGACAAGC TGGTGACCAA GGCCTACGAC
AACGGCAAAG CGCTGAACAT GGCCAGCTAT CTGGAGATCG ACGCCGTGAT CGACCCGGCC
GATAGCCGCG CCTGGCTGCT ACGCGGGCTC AATGCGGCGC CGCGCCCGCC GCGGCGCGAC
GGCAAGAAAC GGCCCTTTAT CGACACCTGG TAA
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| Protein sequence | MPFSALLIAN RGEIAIRIAH ACADLGIRSV AVYAEDDSAC LHTRKADLAV ALAGRGPAAY
LDMDQLIAIA HEQGCAAIHP GYGFLAENAE FARRCQAAGL TFVGPTPETL QLFGDKAAAR
ALAERCAVPL VPGLNQSVTL EQATAFLAEH GSVMLKALAG GGGRGMRAVE DAAQLAEAFA
RCASEAQGAF GSGALYVEKR VRRARHIEVQ VLGDGSGAVS HLWERDCSLQ RRHQKLVEIA
PSPDLDAATR DAIIANAMRL AAEVQYRGIG TFEFLLDLDQ PGRFYFMEAN PRVQVEHTVT
EQVTGVDLLH TQLQLAAGSS LAELNLLNPP APKGYAVQLR LNLETLLADG TARPASGVLG
AYQPPSGPGL RVDGCGYAGY AVSPAYDSLI AKLIASASDY PGALRRAYRA LCEFRLEGVA
SNLHLLQNLL QRDEVIANQV DTSYVERHLG ELLAPCEQAH PHRYFASDTS AQSARASLDA
PPGTLALNAP SAGVLVSLAV AEGDAVATGQ RIAVLEAMKM EFEVKAEHSG IVRALAVAPG
EAVGEGQALA YLEPAEVDGL DSHGEQAVDL AHIRADLAEV LERHARLTDE CRPEAVAKRR
KTGQRTVREN LQDLLDDGSF IEYGAMALAA QRRRRSPEEL LELSPADGLV AGIGTVNAAR
FGSEAARCMA VAYDYTVFAG TQGVMNHKKT DRMLALAEQW RLPVVLFAEG GGGRPGDTDF
VGVAGLDCHT FVAMAKLSGL VPTVGVVSGR CFAGNAALLG CCDVIIATRN ASIGMAGPAM
IEGGGLGSFT PEQVGPTSVQ GPNGVIDVLV EDEAAAVAVA KQYLSYFQGP VNDWQCSDPR
ELRQVIPENR LRVYDIRQVI ELLADDGSVL ELRRQFAPGL ITALIRIEGK SFGLIANNPA
HLGGAIDAVA GDKAARFLQL CEAHDLPIVS LCDTPGFMVG PEAEKQATVR HVSRLFVTAA
SLTVPFFTLV LRKGYGLGAQ AMAAGSFHSP LFTAAWPSGE FGAMGLEGAV RLGFAKELAA
QPDEAARQAL FDKLVTKAYD NGKALNMASY LEIDAVIDPA DSRAWLLRGL NAAPRPPRRD
GKKRPFIDTW
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