| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3799 |
|---|
| Symbol | |
|---|
| ID | 5106030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4188291 |
|---|
| End bp | 4188758 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640505054 |
|---|
| Product | rRNA large subunit methyltransferase |
|---|
| Protein accession | YP_001189279 |
|---|
| Protein GI | 146308814 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1576] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCA AGCTGATCGC CGTCGGTTCG CGCATGCCGC GCTGGGTCGA GGAGGGCTGG
CAGGAGTACG TCAAGCGTCT GCCCGCCGAA CTGCCGCTGG AGCTGGTGGA GATTCCTCTC
AATACCCGCG GCAAGAACGC CGACGTCGCC CGCCTGATCC GTCAGGAGGG CGAGGCCATG
CTGAGCAAGG TGCAGCCGGG CGAACGTATC GTTACCCTGG AGGTCCATGG CAAGCCCTGG
AGCACCGAAC AGCTGGCAGC GGAGCTGGAG CGCTGGCGCC TGGATGCGCG CAACGTCAAC
CTCATGGTCG GCGGCCCGGA AGGGCTGGCG CCGGAGGTCT GCGCGCGTAG CGAACAGCGC
TGGTCGCTGT CGCCGCTGAC GCTGCCACAC CCGCTGGTCA GGATTCTGCT CGGCGAACAG
ATCTACCGTG CCTGGACCGT GCTGTCCGGC CACCCGTACC ACAAGTAG
|
|---|
| Protein sequence | MRIKLIAVGS RMPRWVEEGW QEYVKRLPAE LPLELVEIPL NTRGKNADVA RLIRQEGEAM
LSKVQPGERI VTLEVHGKPW STEQLAAELE RWRLDARNVN LMVGGPEGLA PEVCARSEQR
WSLSPLTLPH PLVRILLGEQ IYRAWTVLSG HPYHK
|
|---|
| |