Gene Pmen_3788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3788 
SymbolholA 
ID5106019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4176887 
End bp4177915 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content68% 
IMG OID640505043 
ProductDNA polymerase III subunit delta 
Protein accessionYP_001189268 
Protein GI146308803 
COG category[L] Replication, recombination and repair 
COG ID[COG1466] DNA polymerase III, delta subunit 
TIGRFAM ID[TIGR01128] DNA polymerase III, delta subunit 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.350473 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTTG CCCCCGCGCA ACTCGGCAAA CACCTGCAAG GCACGCTTGC CCCTGTCTAC 
GCCATCAGCG GGGACGAGCC ACTGCTCTGC CAGGAAGCCG CCGACGCCGT TCGCAACGCC
TGCCGCCAGC AGGGCTTCAG CGAACGCCAG GTATTCAACG CCGAAGCCAA CTTCGACTGG
GGCAACCTGC TGCAGGCCGG CGCCAGCCTT TCGCTGTTCG CCGAAAAACG CCTGCTGGAA
CTGCGCCTGC CCTCCGGCAA GCCAGGCGAC AAGGGCACGG CGGCCCTGCT CGAATACCTG
GGCCGGCCGC CCGAGGACAC AGTTCTGCTG CTCAGCCTGC CCAAGCTCGA CGGCAGCACG
CAGAAATCCA AATGGGCCAA GGCCCTGATC GACGGCCAGG TGAGCCAGTT CATCCAGATC
TGGCCGGTGG ACGCCAACCA GCTGCCGCAA TGGATTCGCC AGCGCCTGGC CCAGGCCGGC
CTGAGCGCCA GCGCCGATGC GGTGGAAATG ATCGCCGCAC GCGTCGAAGG CAACCTGCTG
GCCGCCGCCC AGGAAGTGGA AAAGCTCAAG CTGCTCGCCG AAGGCAACCA GGTGGATGCG
GAGACCGTGC AAGCCGCCGT GGCCGACAGC GCCCGCTTCG ACGTGTTCGG CCTGATCGAC
TGCGCCCTGG CTGGCGACGC GGCGCATGCC CTGCGCGTCC TCGAAGGGCT GCGCGGCGAG
GGCGTGGAAA CGCCGGTCAT CCTCTGGGCT CTGGCGCGCG AGATTCGTCT GCTGGCTGGC
ATCGCCCACC AGCAGAGCCA GGGCATCCCG CTGGACAAGG CCTTCGCCAG CGCCCGCCCT
CCCGTCTGGG ACAAACGCCG CCCGCTGGTT TCCAAAGCCC TGCAACGCCA CAGCAGCAAA
CGCTGGGGCC AGTTGCTGCA GCAGGCGCAG CTGATCGACG CGCAGATCAA GGGCCAGGCG
CCCGGTGATC CCTGGAGCGA TCTGGCACTG CTGACCCTGC AACTGGCCGG TCAACGCCTG
CGCCTGTAA
 
Protein sequence
MKLAPAQLGK HLQGTLAPVY AISGDEPLLC QEAADAVRNA CRQQGFSERQ VFNAEANFDW 
GNLLQAGASL SLFAEKRLLE LRLPSGKPGD KGTAALLEYL GRPPEDTVLL LSLPKLDGST
QKSKWAKALI DGQVSQFIQI WPVDANQLPQ WIRQRLAQAG LSASADAVEM IAARVEGNLL
AAAQEVEKLK LLAEGNQVDA ETVQAAVADS ARFDVFGLID CALAGDAAHA LRVLEGLRGE
GVETPVILWA LAREIRLLAG IAHQQSQGIP LDKAFASARP PVWDKRRPLV SKALQRHSSK
RWGQLLQQAQ LIDAQIKGQA PGDPWSDLAL LTLQLAGQRL RL