Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3788 |
Symbol | holA |
ID | 5106019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4176887 |
End bp | 4177915 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640505043 |
Product | DNA polymerase III subunit delta |
Protein accession | YP_001189268 |
Protein GI | 146308803 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1466] DNA polymerase III, delta subunit |
TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.350473 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCTTG CCCCCGCGCA ACTCGGCAAA CACCTGCAAG GCACGCTTGC CCCTGTCTAC GCCATCAGCG GGGACGAGCC ACTGCTCTGC CAGGAAGCCG CCGACGCCGT TCGCAACGCC TGCCGCCAGC AGGGCTTCAG CGAACGCCAG GTATTCAACG CCGAAGCCAA CTTCGACTGG GGCAACCTGC TGCAGGCCGG CGCCAGCCTT TCGCTGTTCG CCGAAAAACG CCTGCTGGAA CTGCGCCTGC CCTCCGGCAA GCCAGGCGAC AAGGGCACGG CGGCCCTGCT CGAATACCTG GGCCGGCCGC CCGAGGACAC AGTTCTGCTG CTCAGCCTGC CCAAGCTCGA CGGCAGCACG CAGAAATCCA AATGGGCCAA GGCCCTGATC GACGGCCAGG TGAGCCAGTT CATCCAGATC TGGCCGGTGG ACGCCAACCA GCTGCCGCAA TGGATTCGCC AGCGCCTGGC CCAGGCCGGC CTGAGCGCCA GCGCCGATGC GGTGGAAATG ATCGCCGCAC GCGTCGAAGG CAACCTGCTG GCCGCCGCCC AGGAAGTGGA AAAGCTCAAG CTGCTCGCCG AAGGCAACCA GGTGGATGCG GAGACCGTGC AAGCCGCCGT GGCCGACAGC GCCCGCTTCG ACGTGTTCGG CCTGATCGAC TGCGCCCTGG CTGGCGACGC GGCGCATGCC CTGCGCGTCC TCGAAGGGCT GCGCGGCGAG GGCGTGGAAA CGCCGGTCAT CCTCTGGGCT CTGGCGCGCG AGATTCGTCT GCTGGCTGGC ATCGCCCACC AGCAGAGCCA GGGCATCCCG CTGGACAAGG CCTTCGCCAG CGCCCGCCCT CCCGTCTGGG ACAAACGCCG CCCGCTGGTT TCCAAAGCCC TGCAACGCCA CAGCAGCAAA CGCTGGGGCC AGTTGCTGCA GCAGGCGCAG CTGATCGACG CGCAGATCAA GGGCCAGGCG CCCGGTGATC CCTGGAGCGA TCTGGCACTG CTGACCCTGC AACTGGCCGG TCAACGCCTG CGCCTGTAA
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Protein sequence | MKLAPAQLGK HLQGTLAPVY AISGDEPLLC QEAADAVRNA CRQQGFSERQ VFNAEANFDW GNLLQAGASL SLFAEKRLLE LRLPSGKPGD KGTAALLEYL GRPPEDTVLL LSLPKLDGST QKSKWAKALI DGQVSQFIQI WPVDANQLPQ WIRQRLAQAG LSASADAVEM IAARVEGNLL AAAQEVEKLK LLAEGNQVDA ETVQAAVADS ARFDVFGLID CALAGDAAHA LRVLEGLRGE GVETPVILWA LAREIRLLAG IAHQQSQGIP LDKAFASARP PVWDKRRPLV SKALQRHSSK RWGQLLQQAQ LIDAQIKGQA PGDPWSDLAL LTLQLAGQRL RL
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