| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3779 |
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| Symbol | |
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| ID | 5106010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4166581 |
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| End bp | 4167960 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640505034 |
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| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
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| Protein accession | YP_001189259 |
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| Protein GI | 146308794 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.187092 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCGGTC ATTTTTTAAC CACCTCAGAC AGTGCCATGA CCAAGAAGCT CTATATCGAA
ACCCACGGTT GCCAGATGAA CGAGTACGAC AGCTCGCGCA TGGTCGACCT GCTGGGCGAG
CATCAGGCTC TGGAGGTCAC GGAAAAACCC GAAGAAGCCG ACGTGATCCT GCTCAATACC
TGCTCGATCC GCGAAAAGGC CCAGGACAAG GTGTTCTCCC AGCTCGGCCG CTGGCGCGAG
CTGAAGCAGG CCAACCCCGA TCTGGTGATC GGCGTCGGTG GCTGCGTGGC CAGCCAGGAA
GGCGCGGCGA TTCGCGACCG TGCGCCCTAT GTCGACGTGG TATTCGGCCC GCAGACCCTG
CACCGCCTGC CGGAGATGAT CGACGCCGCT CGCACCACCA AGACCGCCCA GGTGGACATT
AGCTTCCCCG AGATCGAGAA ATTCGACCGC CTACCCGAGC CGCGCGTCGA TGGTCCCAGC
GCCTTCGTCT CGGTGATGGA AGGCTGCAGC AAGTACTGCA CCTTCTGCGT AGTGCCCTAC
ACCCGTGGCG AGGAAGTCAG CCGCCCGCTG GCCGATGTGC TGCTGGAAAT CACCCAACTC
ACTGACAAGG GCGTCAAGGA AGTCACCCTG CTCGGGCAGA ACGTCAACGG CTATCGCGGT
GCGACGCCGG ACGGTCGCAT CGCCGATTTC GCCGAGCTGC TGCATGCGGT GGCGGCCCTC
GACGGTATCG AGCGCATCCG TTACACCACC AGCCACCCGC TGGAGTTCTC CGACGCCATC
ATCGCCGCTC ACGCCGAGAT TCCGCAGCTG GTCAAATACC TGCACCTGCC GGTGCAGTCC
GGCTCGGATC GCATCCTCGC GGCGATGAAG CGCAACCACA CCGCCCTGGA ATACAAGTCG
CGCATCCGCA AGCTGCGCGC CGCCGTGCCG GACATTCTGA TCAGCTCGGA CTTCATCGTC
GGCTTCCCCG GCGAGACCGA GAAGGACTTC GAGCAGACCA TGAAGCTGAT CGAGGACGTC
GGCTTCGACT TTTCCTTCTC CTTCATCTAC AGCTCGCGCC CCGGCACGCC GGCCGCCGAC
CTGGTCGACG ACACCCCGGA TGAAGTGAAG AAGCAGCGCC TGGCCATCCT CCAGCACCGC
ATCAACCAGT ACGGTTTCGA GAACAGCCGA CGCATGGTCG GCACGGTGCA GCGCATCCTG
GTCAGCGACT ACTCGAAGAA GGACCCGGGC ATGCTCCAGG GCCGCACCGA GCAGAACCGC
ATCGTCAATT TCCGCTGCGA CAATCCGCGC CTGATCGGCC AGTTCGTCGA TGTGCACATC
GACGACGCCC TGCCCCATTC GCTGCGCGGC ACCCTACTGG ATGCCAGCAC CGTCAACTAA
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| Protein sequence | MCGHFLTTSD SAMTKKLYIE THGCQMNEYD SSRMVDLLGE HQALEVTEKP EEADVILLNT
CSIREKAQDK VFSQLGRWRE LKQANPDLVI GVGGCVASQE GAAIRDRAPY VDVVFGPQTL
HRLPEMIDAA RTTKTAQVDI SFPEIEKFDR LPEPRVDGPS AFVSVMEGCS KYCTFCVVPY
TRGEEVSRPL ADVLLEITQL TDKGVKEVTL LGQNVNGYRG ATPDGRIADF AELLHAVAAL
DGIERIRYTT SHPLEFSDAI IAAHAEIPQL VKYLHLPVQS GSDRILAAMK RNHTALEYKS
RIRKLRAAVP DILISSDFIV GFPGETEKDF EQTMKLIEDV GFDFSFSFIY SSRPGTPAAD
LVDDTPDEVK KQRLAILQHR INQYGFENSR RMVGTVQRIL VSDYSKKDPG MLQGRTEQNR
IVNFRCDNPR LIGQFVDVHI DDALPHSLRG TLLDASTVN
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